PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010937173.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

Dof

Protein Properties

Length: 457aa MW: 50113.6 Da PI: 8.0619

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010937173.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.5	1.4e-38	102	162	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC s +tkfCyynny+++qPr+fCk C+ryWt+GG++rnvPvG+grrknk+s XP_010937173.1 102 PDKILPCPRCSSLDTKFCYYNNYNVNQPRHFCKHCQRYWTAGGTMRNVPVGAGRRKNKNSA 162 68999*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-30	95	159	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.2E-31	104	160	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.491	106	160	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	108	144	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence Send to blast
MAESRDQAIK LFGKTIAFPA SDDNRKKEED KGSSDKATIH ETKDKGHDSL DLETKSEPPI 60 SSSANETLRT SADQAATAMK NLKPEEQKNE TGTSQEKMMK RPDKILPCPR CSSLDTKFCY 120 YNNYNVNQPR HFCKHCQRYW TAGGTMRNVP VGAGRRKNKN SASQFRHISV SDATFQTVRP 180 EVPDPIHHPP LKPNGTVLSF GLDTPRCESV ASVFNLANKT MKNCNQNGFH RPEEQVAPFS 240 AVENGDDRSS GSSVTASNST GDGIGANQQE PVIQNCQGVP DQSPYISGSS PWPYPWSPVP 300 AFFSSNYPLS FYPAPAYWSC AGPGTWSFPW ICPPTSSSNG SSGAGSNSPT LGKHSREGEV 360 LDNTDSEKGE SLKPSNQERC PWIPKTLRMH DPKEAAKSSI WTTMGFKYDS ADVISGGMLF 420 KAFQKKEGTK NHTAETSQIL HANPAALSRA LYFQESS

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence Send to blast

MAESRDQAIK LFGKTIAFPA SDDNRKKEED KGSSDKATIH ETKDKGHDSL DLETKSEPPI  60
SSSANETLRT SADQAATAMK NLKPEEQKNE TGTSQEKMMK RPDKILPCPR CSSLDTKFCY  120
YNNYNVNQPR HFCKHCQRYW TAGGTMRNVP VGAGRRKNKN SASQFRHISV SDATFQTVRP  180
EVPDPIHHPP LKPNGTVLSF GLDTPRCESV ASVFNLANKT MKNCNQNGFH RPEEQVAPFS  240
AVENGDDRSS GSSVTASNST GDGIGANQQE PVIQNCQGVP DQSPYISGSS PWPYPWSPVP  300
AFFSSNYPLS FYPAPAYWSC AGPGTWSFPW ICPPTSSSNG SSGAGSNSPT LGKHSREGEV  360
LDNTDSEKGE SLKPSNQERC PWIPKTLRMH DPKEAAKSSI WTTMGFKYDS ADVISGGMLF  420
KAFQKKEGTK NHTAETSQIL HANPAALSRA LYFQESS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010937173.1	0.0	cyclic dof factor 3 isoform X2
TrEMBL	A0A2H3YR47	0.0	A0A2H3YR47_PHODC; cyclic dof factor 3-like
STRING	XP_008802580.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2099	37	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	7e-53	cycling DOF factor 3