PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010936243.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 352aa    MW: 38911.3 Da    PI: 7.1032
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010936243.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.2e-12176222455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  XP_010936243.1 176 DHIIAERKRREKLSQRFIALSAIIPGL-----KKMDKASVLGDAIKYLKQLQ 222
                     699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.186172221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-17175238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-17176234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-10176222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.78E-13177226No hitNo description
SMARTSM003531.3E-14178227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MEASVARWFP DMGMEDPSFF HHWDMNSLDQ LTAQQLAVAL GQDFQQSLSS ESNTSYPSFQ  60
PPASTTSNTF SCSSMDTKCV ERPKKILKAS SWNSCTTEQN SALAPDASSP SILSFGNLDS  120
PRNQAELYER LVGAVRPKEE MEILIPPGSK RSYDNMVGQG PKRMNMGARP SSHNQDHIIA  180
ERKRREKLSQ RFIALSAIIP GLKKMDKASV LGDAIKYLKQ LQEKVKSLEE QNAKRTVESA  240
VLVKKSQLSS DDDGSYDENF GGQPSGESLP EIGAKMSEKS VLIKIHCEKS KGILVKALCE  300
IEKLHLTVIN TSVIPFASSL LDITVVAQVD EEFSMTVKEL VKKLNSAFKQ FA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-14176225857Transcription factor MYC2
5gnj_B2e-14176225857Transcription factor MYC2
5gnj_E2e-14176225857Transcription factor MYC2
5gnj_F2e-14176225857Transcription factor MYC2
5gnj_G2e-14176225857Transcription factor MYC2
5gnj_I2e-14176225857Transcription factor MYC2
5gnj_M2e-14176225857Transcription factor MYC2
5gnj_N2e-14176225857Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1180185ERKRRE
2181186RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010936244.10.0transcription factor bHLH18
TrEMBLA0A2H3XY290.0A0A2H3XY29_PHODC; transcription factor bHLH18-like
STRINGXP_008790398.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42133572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.17e-66bHLH family protein