PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

XP_010934643.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

MYB_related

Protein Properties

Length: 292aa MW: 31707.8 Da PI: 10.328

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010934643.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.8	2.8e-14	96	140	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ ++ + k+lG+g+W+ I+r + ++Rt+ q+ s+ qky XP_010934643.1 96 PWTEEEHRTFLAGLKMLGKGDWRGISRNFVTTRTPTQVASHAQKY 140 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	19.943	89	145	IPR017930	Myb domain
SuperFamily	SSF46689	1.35E-17	91	146	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.0E-17	92	144	IPR006447	Myb domain, plants
SMART	SM00717	1.2E-10	93	143	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.9E-11	95	139	IPR009057	Homeodomain-like
Pfam	PF00249	2.1E-11	96	140	IPR001005	SANT/Myb domain
CDD	cd00167	2.52E-9	96	141	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MEGGRIRQDS RSEKRLKLFG VTILGDGGGR KEAQDVVRKE AAEEVMRKSK SMGNLAACGS 60 SPAAESGAGD NGYLSDGGLV QNSTRRGGRE RKRGVPWTEE EHRTFLAGLK MLGKGDWRGI 120 SRNFVTTRTP TQVASHAQKY FLRQSNPTKK KRRSSLFDVA PESETSALPL SLKKSCVVTE 180 EVNHHLQDSS LQVRISGNSK DQVVPTLFLT PPLDISNQAF TSFQASFTAC APDFLKVSLS 240 PSIQLHPHYP TQSTAASPPP EKGNLELSIA PPQQHSLTKL SSPKAAETIS VI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	148	152	KKKRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010919736.1	1e-88	transcription factor KUA1
TrEMBL	A0A2H3Z4L2	6e-85	A0A2H3Z4L2_PHODC; transcription factor MYBS2-like
STRING	XP_008808102.1	1e-85	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47390.1	4e-42	MYB_related family protein