PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010932619.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | NAC | ||||||||
Protein Properties | Length: 408aa MW: 46055.4 Da PI: 5.7114 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 107.1 | 2.1e-33 | 58 | 197 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.....sg 81 lp+G++F+P+d+el+++ L+k +g+ ++ e+i++v+ i++++P++Lp vk++ + +fF+++ k+y+tg+rk+r+++ + XP_010932619.1 58 LPRGVKFDPSDQELLWHLLAKVGQGDAkphpfIN--EFIPTVEegdgICYTHPQKLP-GVKQDGSVSHFFHRTFKAYNTGTRKRRKINsddlgDV 149 799************7777766665557754422..33444423335**********.677888899******************8655555588 PP NAM 82 yWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +W++tgk+k+v+ +g++ g+kk++v+y + + +k+ekt+Wvmh+y+l XP_010932619.1 150 RWHKTGKTKPVIM-DGKHQGCKKIMVLYmsTIKGEKPEKTNWVMHQYHL 197 9************.9999**********6633667777*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.27E-39 | 43 | 216 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.371 | 58 | 216 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-14 | 59 | 197 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000077 | Biological Process | DNA damage checkpoint | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010332 | Biological Process | response to gamma radiation | ||||
GO:0040020 | Biological Process | regulation of meiotic nuclear division | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 408 aa Download sequence Send to blast |
MTGPSWLIDS KRIATKIKNA SEPVDSSRYK WMSNPTKACP RCNHIIDNSD VVQEWPGLPR 60 GVKFDPSDQE LLWHLLAKVG QGDAKPHPFI NEFIPTVEEG DGICYTHPQK LPGVKQDGSV 120 SHFFHRTFKA YNTGTRKRRK INSDDLGDVR WHKTGKTKPV IMDGKHQGCK KIMVLYMSTI 180 KGEKPEKTNW VMHQYHLGTG EDEKDGEYVV SKIFYQQQSK PGDKNGQDLT LEIVEAVVAE 240 VDPVANPKSV SSECHVGKQD PAHSPEQTSD QVKMYHENRV EEHNAPLECE KFDDQDNHPT 300 GDLKWWEGES QFLLDSQQLA EGIAICDEFL LSQSSCGGDE AKKSRPRLSD YAHMGAEDLK 360 KDLEACQNLS NYDRSNIELD PPQDFRLSQL EFGSQDSFLA WGGSKLAD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010932619.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
Swissprot | Q6NQK2 | 1e-151 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A2H3YML2 | 0.0 | A0A2H3YML2_PHODC; SUPPRESSOR OF GAMMA RESPONSE 1 isoform X2 | ||||
STRING | XP_008800749.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6785 | 36 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-148 | NAC family protein |