PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010928675.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

bHLH

Protein Properties

Length: 464aa MW: 50173.6 Da PI: 5.2508

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010928675.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.7	1.3e-05	356	393	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L XP_010928675.1 356 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 393 677888999*****998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.973	344	393	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.36E-11	354	409	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.09E-5	354	397	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.0E-8	358	397	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence Send to blast
MADDQFQSGI CSGGSWWNLA RSAGLDGPAS VSCSTAITDM GGGGFSWATA ELAEPKARSG 60 EESAGSVSGS SVSFQDTPNL PPSDVGPSVI DSTLQMPSFS LSTPPIDWTQ ALLRSSGRAE 120 TSFHAMLQED LSSRSYFRQD PSIESNQVHA VTEDSSTNLF KDMNPSFLLD QQHLSSGDES 180 SVAGVCSYPL VPAPSYGCSS MMLQGLLEPD ARSQQSIYDN RLVNYQSPMM TYCGSSAESL 240 QQSWPKFPQF LRSSPPKQQQ QQPGNQLQFS NNTPFWNASA ASMSEVRTGF CHPMPSQYVS 300 QAFEQKPTCS NLATKSISEG VRDSSSSASK KSGSNESSFK KPKIETPSPL PTFKVRKEKL 360 GDRITALQQL VSPFGKTDTA SVLHEAIEYI KFLHDQVGVL SSPYLKNGNP MQHQQGSDKS 420 QDGEGPKQDL RSRGLCLVPI SSTYPVASET PADFWHPSFG GTFR

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence Send to blast

MADDQFQSGI CSGGSWWNLA RSAGLDGPAS VSCSTAITDM GGGGFSWATA ELAEPKARSG  60
EESAGSVSGS SVSFQDTPNL PPSDVGPSVI DSTLQMPSFS LSTPPIDWTQ ALLRSSGRAE  120
TSFHAMLQED LSSRSYFRQD PSIESNQVHA VTEDSSTNLF KDMNPSFLLD QQHLSSGDES  180
SVAGVCSYPL VPAPSYGCSS MMLQGLLEPD ARSQQSIYDN RLVNYQSPMM TYCGSSAESL  240
QQSWPKFPQF LRSSPPKQQQ QQPGNQLQFS NNTPFWNASA ASMSEVRTGF CHPMPSQYVS  300
QAFEQKPTCS NLATKSISEG VRDSSSSASK KSGSNESSFK KPKIETPSPL PTFKVRKEKL  360
GDRITALQQL VSPFGKTDTA SVLHEAIEYI KFLHDQVGVL SSPYLKNGNP MQHQQGSDKS  420
QDGEGPKQDL RSRGLCLVPI SSTYPVASET PADFWHPSFG GTFR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010928675.1	0.0	transcription factor bHLH123
TrEMBL	A0A2H3XX26	0.0	A0A2H3XX26_PHODC; transcription factor bHLH123-like
STRING	XP_008789835.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2970	34	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	1e-56	bHLH family protein