PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010926474.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 365aa    MW: 38968.6 Da    PI: 5.8941
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010926474.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.89.5e-14183229354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h+e+ErrRR+riN  +++Lr+llP+      +K +Ka+ L ++++++k+L
  XP_010926474.1 183 KSHSEAERRRRERINAHLAKLRSLLPNT-----TKTDKASLLAEVIQHVKEL 229
                     79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.003180229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-11183229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-14184239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-14184238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-13186235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.53E-5193232No hitNo description
Gene3DG3DSA:3.30.70.2601.6E-5266336No hitNo description
CDDcd048731.56E-5266313No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MENNGDGSSS KIHEFQGYQE EEQRQQQYNN NNMSNHIGGG GGHAGFVFPA EAAAAIGVVG  60
SVASPSILPW PLATQFAPSN LVRDQNQGQF FPSLPTLPPP PPLSPPFYGD LYARRASTAL  120
QFAYGGAGLG SSSDTSGLGG LYMGSEALAR GGGVSSLSAF GGLELGKLTQ QEIMDAKALA  180
ASKSHSEAER RRRERINAHL AKLRSLLPNT TKTDKASLLA EVIQHVKELK RQTLEIAEES  240
PLPTESDELT VDAGSDEDGR FIVKASLCCD DRSDLLPDLI KALKALRLRT LKAEITTLGG  300
RVKNVLVITG EDDADHQQQQ SIASIQEALK AVMERAAASD EPSSAGGIKR QRTTNLSTIL  360
EHRSI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1188193ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029121428.10.0transcription factor bHLH30
SwissprotQ9S7Y16e-84BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A3Q0HY370.0A0A3Q0HY37_PHODC; transcription factor bHLH30-like
STRINGXP_008782353.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19183898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.14e-61bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]