PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010924666.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family B3
Protein Properties Length: 352aa    MW: 40711.1 Da    PI: 10.1798
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010924666.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.73.5e-2119107299
                     EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     fkvl     +++ rl +p +f+++++++  +s++++l+ +sg +W v+l   k+ ++++lt+GW +Fvk++ Lke +f+vF++dg + f  +v +
  XP_010924666.1  19 FKVL--LGDFAQ-RLKIPPNFMKHISME--TSRKVILQGPSGSKWYVQL--GKNIKGTFLTAGWPKFVKDHSLKEHEFLVFQYDGCMHF--TVLI 104
                     5555..445554.6********888766..6779***************..999999**************************987777..9999 PP

                     E-S CS
              B3  97 frk 99 
                     f++
  XP_010924666.1 105 FDT 107
                     986 PP
2B349.38.6e-16248334598
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     +t  +v ++ +l++p  f ++h     + + l+l+d++g+ W v +i   + +   l++GW+ F + n+L+egD + F+l+g    el+v++fr
  XP_010924666.1 248 MTAMSVYRTYMLRIPAWFSRAHLPH--KRTNLVLRDPNGKAWVVVYIP--CTRD-RLSGGWSAFSRGNNLEEGDYCAFELVG--PVELRVHIFR 334
                     56778999999***********533..4558***************54..4433.49**********************998..6667999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-2514110IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.15615108IPR003340B3 DNA binding domain
SuperFamilySSF1019363.73E-2515110IPR015300DNA-binding pseudobarrel domain
CDDcd100176.83E-2316106No hitNo description
SMARTSM010199.8E-1718108IPR003340B3 DNA binding domain
PfamPF023627.7E-1919107IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-21240334IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-24241334IPR015300DNA-binding pseudobarrel domain
CDDcd100175.76E-23242334No hitNo description
PROSITE profilePS5086313.902244336IPR003340B3 DNA binding domain
SMARTSM010199.9E-11245336IPR003340B3 DNA binding domain
PfamPF023623.0E-14247334IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MAGKRQQRCR SLVRKPHFFK VLLGDFAQRL KIPPNFMKHI SMETSRKVIL QGPSGSKWYV  60
QLGKNIKGTF LTAGWPKFVK DHSLKEHEFL VFQYDGCMHF TVLIFDTTAC EREDVLTVRP  120
HRSSKSSNER KTRGRPPKIS LDIGCYIKNE ASESELTDLR NDRHAPNQLQ VHYSNSIQGR  180
CSPPPNPCED VKIKTEDDEL PICMIGSPTR QYRGYVSRRR PVTAEERAKA REAANSFTSI  240
FPYMIMRMTA MSVYRTYMLR IPAWFSRAHL PHKRTNLVLR DPNGKAWVVV YIPCTRDRLS  300
GGWSAFSRGN NLEEGDYCAF ELVGPVELRV HIFRVVEETI PVIRMPRMQQ MC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010924666.10.0B3 domain-containing protein Os01g0723500
SwissprotQ8S2E61e-103Y1235_ORYSJ; B3 domain-containing protein Os01g0723500
TrEMBLA0A3Q0IL240.0A0A3Q0IL24_PHODC; B3 domain-containing protein Os01g0723500-like
STRINGXP_008810645.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127923135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-19B3 family protein