PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010922885.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

Dof

Protein Properties

Length: 512aa MW: 55081.1 Da PI: 6.3435

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010922885.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.8	1.1e-38	121	181	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s +tkfCyynny+++qPr+fC++C+ryWt+GG++rnvPvG+grrk+k+s XP_010922885.1 121 PDKILPCPRCNSLDTKFCYYNNYNVNQPRHFCRNCQRYWTAGGTMRNVPVGSGRRKSKHSA 181 7899******************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-30	118	178	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.9E-32	123	179	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.723	125	179	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	127	163	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 512 aa Download sequence Send to blast
MADSRDPAIK LFGRTIPLTE GQGQAADGEN SGPASATEEP PAVDEKEESR VVTDAEVKDS 60 VSDAAEELDR TKLSSCSGLD SGKEDDHQMS AHEDKAVADP KPEKDQTEAN ASNQEKVLKK 120 PDKILPCPRC NSLDTKFCYY NNYNVNQPRH FCRNCQRYWT AGGTMRNVPV GSGRRKSKHS 180 ASHYRHIMMT SDGMPCNQVD ASDSSSHQAL PAGLSSPTRP LKGNGTVLKF GSEASLCESM 240 ASVLGDREQK RNAEVGSSAG GENREEPSCA SFVMASNCVE NDHSKIAFHK EQNGLQSGCN 300 GLTPMHHLQC FPGPPWIYPW HPGWNNVSSM AAGRCSSELV YRPENGSPNP VPWCPPMMAT 360 PAFCAPTIPF PFVPASFWGC MPSWANGTLS MPWVGSNGGL SPSSSASSSS GSGNGSPTLG 420 KHSRDATSQS EEKTEKSLWV PKTLRIDDPD EAAKSSIWAT LGIKPDESIK KGGIFKAFHS 480 KTESKDHTAD AAQVLQANPA ALSRSQTFQE CT

Sequence ? help Back to Top

Protein Sequence Length: 512 aa Download sequence Send to blast

MADSRDPAIK LFGRTIPLTE GQGQAADGEN SGPASATEEP PAVDEKEESR VVTDAEVKDS  60
VSDAAEELDR TKLSSCSGLD SGKEDDHQMS AHEDKAVADP KPEKDQTEAN ASNQEKVLKK  120
PDKILPCPRC NSLDTKFCYY NNYNVNQPRH FCRNCQRYWT AGGTMRNVPV GSGRRKSKHS  180
ASHYRHIMMT SDGMPCNQVD ASDSSSHQAL PAGLSSPTRP LKGNGTVLKF GSEASLCESM  240
ASVLGDREQK RNAEVGSSAG GENREEPSCA SFVMASNCVE NDHSKIAFHK EQNGLQSGCN  300
GLTPMHHLQC FPGPPWIYPW HPGWNNVSSM AAGRCSSELV YRPENGSPNP VPWCPPMMAT  360
PAFCAPTIPF PFVPASFWGC MPSWANGTLS MPWVGSNGGL SPSSSASSSS GSGNGSPTLG  420
KHSRDATSQS EEKTEKSLWV PKTLRIDDPD EAAKSSIWAT LGIKPDESIK KGGIFKAFHS  480
KTESKDHTAD AAQVLQANPA ALSRSQTFQE CT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010922885.1	0.0	cyclic dof factor 1
TrEMBL	A0A2H3Y2P1	0.0	A0A2H3Y2P1_PHODC; cyclic dof factor 2-like
STRING	XP_008792513.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1434	38	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	3e-75	cycling DOF factor 2