PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010922278.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family G2-like
Protein Properties Length: 299aa    MW: 32340.3 Da    PI: 5.4794
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010922278.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like92.73.1e-29150203155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     +prl+Wt +LH+rF+++v++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  XP_010922278.1 150 RPRLVWTAQLHKRFIDVVAHL-GIKNAVPKTIMQLMNVEGLTRENVASHLQKYRL 203
                     59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.536147206IPR017930Myb domain
SuperFamilySSF466892.33E-18148207IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-28149207IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-23151203IPR006447Myb domain, plants
PfamPF002491.1E-7153202IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MGEEADAKDY DMVAGDSEGD EGRVLEWEVG LPSADDLIPL SQSLISPDLA YAFSIAPEPA  60
RTLLDVYRAS QSTVSTLRRH PTSSLAAAAL NFFSPFPSPS SVATDDPVVF EGEGDDAESG  120
TIATVAIAGV SSCLPTEDPG DEHSSRALKR PRLVWTAQLH KRFIDVVAHL GIKNAVPKTI  180
MQLMNVEGLT RENVASHLQK YRLYRKRKEG IPNEGSFSFD HLPHEPPAQM PMPYGMPSPP  240
VPMPVFSIAF HPGHNGSMEM MPIVNHHQAA GAYHGFVSHH PNGGVIGDRQ GDWSAANKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A3e-33150206157Transcription factor LUX
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019706410.10.0transcription factor PCL1-like isoform X2
RefseqXP_029120695.10.0transcription factor PCL1-like isoform X2
RefseqXP_029120696.10.0transcription factor PCL1-like isoform X2
TrEMBLA0A2H3XLG81e-169A0A2H3XLG8_PHODC; transcription factor PCL1-like isoform X1
STRINGXP_008785550.11e-170(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP162034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46640.21e-66G2-like family protein