PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010921433.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | WRKY | ||||||||
Protein Properties | Length: 311aa MW: 34107.4 Da PI: 6.8573 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 106.2 | 1.6e-33 | 155 | 212 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCt+a+C vkk+vers+ed +vv++tYeg+Hnh+ XP_010921433.1 155 EDGYRWRKYGQKAVKNSPFPRSYYRCTHATCGVKKRVERSSEDRTVVVTTYEGQHNHP 212 8********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.8E-34 | 139 | 214 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.94E-29 | 147 | 214 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.456 | 149 | 214 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.2E-38 | 154 | 213 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.7E-27 | 155 | 212 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MMMEKREEEM DVAAAAGVSP FAADQIGGIF DTAFDVRGAD KSSQGFLELL GFQDLHRSFF 60 DIPLPAPTVE VAPSVPPPES SEVLNFPATP NSSSISSSST EAATDTADPA KPHREEEEQG 120 KAKKTGSKEG KKKGQKRQRE PRFAFKTKSE VDHLEDGYRW RKYGQKAVKN SPFPRSYYRC 180 THATCGVKKR VERSSEDRTV VVTTYEGQHN HPCPIVPRGG HPAPLPPLAA EPPPPPPGLG 240 FVFPSFQVKD LHFPYLTSYL PPPLDFQHVS TGIVASAPGD RRLCNPTADV PIRDHGLLQD 300 LIPSDIGKKE E |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 7e-27 | 144 | 214 | 7 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 7e-27 | 144 | 214 | 7 | 77 | Probable WRKY transcription factor 4 |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010921433.1 | 0.0 | probable WRKY transcription factor 48 | ||||
Refseq | XP_029120413.1 | 0.0 | probable WRKY transcription factor 48 | ||||
TrEMBL | A0A2H3XB96 | 1e-167 | A0A2H3XB96_PHODC; LOW QUALITY PROTEIN: probable WRKY transcription factor 48 | ||||
STRING | XP_008781154.1 | 1e-168 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2125 | 37 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49520.1 | 9e-42 | WRKY DNA-binding protein 48 |