PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010921433.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family WRKY
Protein Properties Length: 311aa    MW: 34107.4 Da    PI: 6.8573
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010921433.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.21.6e-33155212259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dgy+WrKYGqK vk+s+fprsYYrCt+a+C vkk+vers+ed +vv++tYeg+Hnh+
  XP_010921433.1 155 EDGYRWRKYGQKAVKNSPFPRSYYRCTHATCGVKKRVERSSEDRTVVVTTYEGQHNHP 212
                     8********************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.8E-34139214IPR003657WRKY domain
SuperFamilySSF1182909.94E-29147214IPR003657WRKY domain
PROSITE profilePS5081131.456149214IPR003657WRKY domain
SMARTSM007742.2E-38154213IPR003657WRKY domain
PfamPF031068.7E-27155212IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MMMEKREEEM DVAAAAGVSP FAADQIGGIF DTAFDVRGAD KSSQGFLELL GFQDLHRSFF  60
DIPLPAPTVE VAPSVPPPES SEVLNFPATP NSSSISSSST EAATDTADPA KPHREEEEQG  120
KAKKTGSKEG KKKGQKRQRE PRFAFKTKSE VDHLEDGYRW RKYGQKAVKN SPFPRSYYRC  180
THATCGVKKR VERSSEDRTV VVTTYEGQHN HPCPIVPRGG HPAPLPPLAA EPPPPPPGLG  240
FVFPSFQVKD LHFPYLTSYL PPPLDFQHVS TGIVASAPGD RRLCNPTADV PIRDHGLLQD  300
LIPSDIGKKE E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-27144214777Probable WRKY transcription factor 4
2lex_A7e-27144214777Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010921433.10.0probable WRKY transcription factor 48
RefseqXP_029120413.10.0probable WRKY transcription factor 48
TrEMBLA0A2H3XB961e-167A0A2H3XB96_PHODC; LOW QUALITY PROTEIN: probable WRKY transcription factor 48
STRINGXP_008781154.11e-168(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21253796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.19e-42WRKY DNA-binding protein 48