PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010921318.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

Dof

Protein Properties

Length: 530aa MW: 57170.6 Da PI: 5.2542

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010921318.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.7	7e-40	142	202	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s XP_010921318.1 142 PDKVLPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHSA 202 78999*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-30	128	199	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.7E-32	143	200	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.975	146	200	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	148	184	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 530 aa Download sequence Send to blast
MVAGIWKRRL DGAEMSEPRD PAIKLFGKTI PLPESLPPPP PAEAEDKEAR PTDPAPPPDP 60 AEDGEKDTCK ENTEMEVNNP NPDVPEEVNQ CDPHNSGLHN GNGDDNEGPN QDEKVATDSK 120 AEHEHDKTEA DSSGQEKVLK KPDKVLPCPR CNSMDTKFCY YNNYNVNQPR HFCKNCQRYW 180 TAGGTMRNVP VGAGRRKNKH SASHYRHIMM SSDGLASGRV VAPDLTPHQA LPCGPSVSMR 240 PMKGNGSVLK FGPEVPLCES MASGLNLEEQ KKNPDFGSIA SGENKEDPSC ASSVTASNCV 300 ENGFPENAVP MEQNGTQGYC NGLTPMPHLQ CYPGAPWAYP WGPGWNNVAA MAASRCSSEL 360 VYGPENGTPS PIPWSPPSMM AAPAFCAPTI PFPFMPASFW GCMSSWPNGA WNVTWLGSNG 420 GISSSSSTSN SGCSGNGSPT LGKHSRDASL QGEEKMEKSL WVPKTLRIDD PDEAAKSSIW 480 ATLGIKPEEG GIFKPFQSKA ESKDQRSDAA QVLHANPAAF SRSRSFQEST

Sequence ? help Back to Top

Protein Sequence Length: 530 aa Download sequence Send to blast

MVAGIWKRRL DGAEMSEPRD PAIKLFGKTI PLPESLPPPP PAEAEDKEAR PTDPAPPPDP  60
AEDGEKDTCK ENTEMEVNNP NPDVPEEVNQ CDPHNSGLHN GNGDDNEGPN QDEKVATDSK  120
AEHEHDKTEA DSSGQEKVLK KPDKVLPCPR CNSMDTKFCY YNNYNVNQPR HFCKNCQRYW  180
TAGGTMRNVP VGAGRRKNKH SASHYRHIMM SSDGLASGRV VAPDLTPHQA LPCGPSVSMR  240
PMKGNGSVLK FGPEVPLCES MASGLNLEEQ KKNPDFGSIA SGENKEDPSC ASSVTASNCV  300
ENGFPENAVP MEQNGTQGYC NGLTPMPHLQ CYPGAPWAYP WGPGWNNVAA MAASRCSSEL  360
VYGPENGTPS PIPWSPPSMM AAPAFCAPTI PFPFMPASFW GCMSSWPNGA WNVTWLGSNG  420
GISSSSSTSN SGCSGNGSPT LGKHSRDASL QGEEKMEKSL WVPKTLRIDD PDEAAKSSIW  480
ATLGIKPEEG GIFKPFQSKA ESKDQRSDAA QVLHANPAAF SRSRSFQEST

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010921318.1	0.0	cyclic dof factor 2
TrEMBL	A0A2H3XBG3	0.0	A0A2H3XBG3_PHODC; cyclic dof factor 3-like
STRING	XP_008781227.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1434	38	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-49	cycling DOF factor 2