PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010920614.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

Dof

Protein Properties

Length: 345aa MW: 35952.2 Da PI: 9.3921

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010920614.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.1	4.6e-39	72	132	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e alkcprCdstntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+++ XP_010920614.1 72 PEPALKCPRCDSTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRTK 132 67899*****************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-36	56	130	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.1E-32	75	130	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.739	76	130	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	78	114	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MVFPTVPVYL DPRNWNQQQA HHQPQSSSGG VSGEPLQPPT GVVAARPEGP AAGLVRPGSM 60 VDRARLAKIA QPEPALKCPR CDSTNTKFCY FNNYSLSQPR HFCKTCRRYW TRGGALRNVP 120 VGGGCRRNKR TKPAGSSTSK SSTTTTTTDR QAGASSSTSS TATTVVGISG AIPSNLPMPP 180 QMPFMAATLH PLAEYNTPSI GLSFAGIQPV DAMDYQVGAS SSSAGGGVGL EQWRLPQIQQ 240 FPFFGGLEPP PPPPAPVSGL YPFDGEGSGV DGGAFAKATG SGLITQLASV KMEDNQHGLG 300 LPRQYPGVPR NDQYWGSSSG GGSSTGSGWA PDLSGFNSSS AGNLL

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MVFPTVPVYL DPRNWNQQQA HHQPQSSSGG VSGEPLQPPT GVVAARPEGP AAGLVRPGSM  60
VDRARLAKIA QPEPALKCPR CDSTNTKFCY FNNYSLSQPR HFCKTCRRYW TRGGALRNVP  120
VGGGCRRNKR TKPAGSSTSK SSTTTTTTDR QAGASSSTSS TATTVVGISG AIPSNLPMPP  180
QMPFMAATLH PLAEYNTPSI GLSFAGIQPV DAMDYQVGAS SSSAGGGVGL EQWRLPQIQQ  240
FPFFGGLEPP PPPPAPVSGL YPFDGEGSGV DGGAFAKATG SGLITQLASV KMEDNQHGLG  300
LPRQYPGVPR NDQYWGSSSG GGSSTGSGWA PDLSGFNSSS AGNLL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	125	132	RRNKRTKP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010920614.1	0.0	dof zinc finger protein DOF5.1
TrEMBL	A0A2H3X7L1	1e-147	A0A2H3X7L1_PHODC; dof zinc finger protein DOF3.6-like isoform X1
STRING	XP_008779546.1	1e-148	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4893	29	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.1	2e-50	OBF-binding protein 3