PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010919161.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

BBR-BPC

Protein Properties

Length: 350aa MW: 39255.4 Da PI: 10.2828

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010919161.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	380.2	3.4e-116	1	350	1	301
GAGA_bind 1 mdddgsre..rnkg.yye........paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllal 84 mdd+g+re r+k+ +y+ p+++lken ++++m+++aerd++i+ern+al+ekkaa+aerdma lqrd+a++ern+a++erdn+++al XP_010919161.1 1 MDDSGQREngRHKTdQYKqvhtqwmmPQHQLKENHTIKIMTIMAERDNAIQERNIALAEKKAALAERDMAILQRDAAISERNNAIMERDNAIAAL 95 99*99999999999999999778**************************************************************** PP GAGA_bind 85 llvensla.....salpvgvqvlsgtksidslqqlse.......pqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakk 166 ++++++ sa+p+g+++ +gtk+i+++qq++ pql+d +++ +re++++ea+pi++a e + + +k k+ ++++k +++ +kk XP_010919161.1 96 QYARENGLngngaSACPPGCTA-RGTKHIHHHQQQHLqhihlspPQLSDAPYNhTREMHITEAFPISTASEGVAKGRKAKRPRKENKVQNSPSKK 189 988776669998999999975.899999999995535699*********9**********999888887777666666655555555 PP GAGA_bind 167 kkkksekskkkvkkesader............................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSa 233 k+++ks+k ++ + r +++e+k +dl+ln+v++De+t+ +PvCsCtG+ +qCYkWG+GGWqSa XP_010919161.1 190 SSKSPRKSRKGGGEDLN--RqvtiakpasewrnevrggddlnkqvaltKHQEWKGQDLGLNQVTFDEATMSTPVCSCTGKYQQCYKWGSGGWQSA 282 55544444443333332..23578889999*************9999**************************************** PP GAGA_bind 234 CCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 CCttt+S+yPLPv++++r+aR++grKmS+gaf+klL++LaaeG+dls+pvDLk+hWAkHGtn+++ti+ XP_010919161.1 283 CCTTTLSMYPLPVMPNKRHARVGGRKMSGGAFRKLLSRLAAEGHDLSQPVDLKEHWAKHGTNRYITIK 350 *****************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06217	2.9E-101	1	350	IPR010409	GAGA-binding transcriptional activator
SMART	SM01226	5.9E-159	1	350	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MDDSGQRENG RHKTDQYKQV HTQWMMPQHQ LKENHTIKIM TIMAERDNAI QERNIALAEK 60 KAALAERDMA ILQRDAAISE RNNAIMERDN AIAALQYARE NGLNGNGASA CPPGCTARGT 120 KHIHHHQQQH LQHIHLSPPQ LSDAPYNHTR EMHITEAFPI STASEGVAKG RKAKRPRKEN 180 KVQNSPSKKS SKSPRKSRKG GGEDLNRQVT IAKPASEWRN EVRGGDDLNK QVALTKHQEW 240 KGQDLGLNQV TFDEATMSTP VCSCTGKYQQ CYKWGSGGWQ SACCTTTLSM YPLPVMPNKR 300 HARVGGRKMS GGAFRKLLSR LAAEGHDLSQ PVDLKEHWAK HGTNRYITIK

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MDDSGQRENG RHKTDQYKQV HTQWMMPQHQ LKENHTIKIM TIMAERDNAI QERNIALAEK  60
KAALAERDMA ILQRDAAISE RNNAIMERDN AIAALQYARE NGLNGNGASA CPPGCTARGT  120
KHIHHHQQQH LQHIHLSPPQ LSDAPYNHTR EMHITEAFPI STASEGVAKG RKAKRPRKEN  180
KVQNSPSKKS SKSPRKSRKG GGEDLNRQVT IAKPASEWRN EVRGGDDLNK QVALTKHQEW  240
KGQDLGLNQV TFDEATMSTP VCSCTGKYQQ CYKWGSGGWQ SACCTTTLSM YPLPVMPNKR  300
HARVGGRKMS GGAFRKLLSR LAAEGHDLSQ PVDLKEHWAK HGTNRYITIK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010919161.1	0.0	barley B recombinant-like protein D isoform X1
Refseq	XP_010919163.1	0.0	barley B recombinant-like protein D isoform X1
Refseq	XP_029119895.1	0.0	barley B recombinant-like protein D isoform X1
Swissprot	Q5VSA8	1e-142	BBRD_ORYSJ; Barley B recombinant-like protein D
TrEMBL	A0A2H3ZJS8	0.0	A0A2H3ZJS8_PHODC; barley B recombinant-like protein D isoform X2
STRING	XP_008779916.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6226	37	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42520.1	1e-110	basic pentacysteine 6

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]