PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010919161.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 350aa MW: 39255.4 Da PI: 10.2828 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 380.2 | 3.4e-116 | 1 | 350 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yye........paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllal 84 mdd+g+re r+k+ +y+ p+++lken ++++m+++aerd++i+ern+al+ekkaa+aerdma lqrd+a++ern+a++erdn+++al XP_010919161.1 1 MDDSGQREngRHKTdQYKqvhtqwmmPQHQLKENHTIKIMTIMAERDNAIQERNIALAEKKAALAERDMAILQRDAAISERNNAIMERDNAIAAL 95 99***99999**9999999**99999778****************************************************************** PP GAGA_bind 85 llvensla.....salpvgvqvlsgtksidslqqlse.......pqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakk 166 ++++++ sa+p+g+++ +gtk+i+++qq++ pql+d +++ +re++++ea+pi++a e + + +k k+ ++++k +++ +kk XP_010919161.1 96 QYARENGLngngaSACPPGCTA-RGTKHIHHHQQQHLqhihlspPQLSDAPYNhTREMHITEAFPISTASEGVAKGRKAKRPRKENKVQNSPSKK 189 *988776669998999999975.899999999995535699************9**************999888887777666666655555555 PP GAGA_bind 167 kkkksekskkkvkkesader............................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSa 233 k+++ks+k ++ + r +++e+k +dl+ln+v++De+t+ +PvCsCtG+ +qCYkWG+GGWqSa XP_010919161.1 190 SSKSPRKSRKGGGEDLN--RqvtiakpasewrnevrggddlnkqvaltKHQEWKGQDLGLNQVTFDEATMSTPVCSCTGKYQQCYKWGSGGWQSA 282 55544444443333332..23578889999*****************9999******************************************** PP GAGA_bind 234 CCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 CCttt+S+yPLPv++++r+aR++grKmS+gaf+klL++LaaeG+dls+pvDLk+hWAkHGtn+++ti+ XP_010919161.1 283 CCTTTLSMYPLPVMPNKRHARVGGRKMSGGAFRKLLSRLAAEGHDLSQPVDLKEHWAKHGTNRYITIK 350 *******************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF06217 | 2.9E-101 | 1 | 350 | IPR010409 | GAGA-binding transcriptional activator |
SMART | SM01226 | 5.9E-159 | 1 | 350 | IPR010409 | GAGA-binding transcriptional activator |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MDDSGQRENG RHKTDQYKQV HTQWMMPQHQ LKENHTIKIM TIMAERDNAI QERNIALAEK 60 KAALAERDMA ILQRDAAISE RNNAIMERDN AIAALQYARE NGLNGNGASA CPPGCTARGT 120 KHIHHHQQQH LQHIHLSPPQ LSDAPYNHTR EMHITEAFPI STASEGVAKG RKAKRPRKEN 180 KVQNSPSKKS SKSPRKSRKG GGEDLNRQVT IAKPASEWRN EVRGGDDLNK QVALTKHQEW 240 KGQDLGLNQV TFDEATMSTP VCSCTGKYQQ CYKWGSGGWQ SACCTTTLSM YPLPVMPNKR 300 HARVGGRKMS GGAFRKLLSR LAAEGHDLSQ PVDLKEHWAK HGTNRYITIK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010919161.1 | 0.0 | barley B recombinant-like protein D isoform X1 | ||||
Refseq | XP_010919163.1 | 0.0 | barley B recombinant-like protein D isoform X1 | ||||
Refseq | XP_029119895.1 | 0.0 | barley B recombinant-like protein D isoform X1 | ||||
Swissprot | Q5VSA8 | 1e-142 | BBRD_ORYSJ; Barley B recombinant-like protein D | ||||
TrEMBL | A0A2H3ZJS8 | 0.0 | A0A2H3ZJS8_PHODC; barley B recombinant-like protein D isoform X2 | ||||
STRING | XP_008779916.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6226 | 37 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42520.1 | 1e-110 | basic pentacysteine 6 |
Publications ? help Back to Top | |||
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