PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010917007.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 473aa    MW: 52675.7 Da    PI: 5.404
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010917007.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding461.2e-143478348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +WT+eEd+ll + v+++G  +W++Ia+ +   +++ qc+ rw++yl
   XP_010917007.1 34 SWTPEEDDLLREQVALHGIVNWTKIASQFR-DKSGRQCRRRWNSYL 78
                     6*****************************.*************97 PP
2Myb_DNA-binding46.21.1e-1484127146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g W++eEd+ll +a k +G++ W+ Ia+ +  gRt++ +k+r+ +
   XP_010917007.1  84 KGGWSPEEDKLLCEAQKVYGNR-WTEIAKVVS-GRTDNAVKNRFST 127
                      688*******************.*********.**********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.5912782IPR017930Myb domain
SuperFamilySSF466891.61E-2631125IPR009057Homeodomain-like
SMARTSM007174.5E-143180IPR001005SANT/Myb domain
CDDcd001676.80E-143478No hitNo description
Gene3DG3DSA:1.10.10.605.6E-183581IPR009057Homeodomain-like
PfamPF139213.5E-173595No hitNo description
Gene3DG3DSA:1.10.10.602.7E-2082132IPR009057Homeodomain-like
PROSITE profilePS5129418.09383133IPR017930Myb domain
SMARTSM007173.9E-1583131IPR001005SANT/Myb domain
CDDcd001675.10E-1187128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MEAAGMNSDD AVALAAAAAG TAAAPPKKDR RIVSWTPEED DLLREQVALH GIVNWTKIAS  60
QFRDKSGRQC RRRWNSYLNS DCKKGGWSPE EDKLLCEAQK VYGNRWTEIA KVVSGRTDNA  120
VKNRFSTLCK KRATNEALFK ENSGSFLNSN KRVIIQNGCI TVQTRELSIP TKQMRYNISD  180
LKESNISEQY TGNHEMKKDQ LRSPLAVLAP NCDIAGGLLT QNHVGNDSRT AVYDENKTTC  240
TFFRKDDPKV TALLQQAELL SSLAHKVNAE NTKESLDDAW KGIQDYLAQT EETEILSRKI  300
SGTEFVLDDF TDLIEDLKGT NTTGLQSLRQ SELHQNSEGT SEYSTGLAEH FETQRNEMDH  360
QTDNCSFNNN TEVNGPHKDM QLPSITTHQE EVLPPIKMPK ENDESSCNVS NSQFASPLPT  420
TPPFRSLADE ITTPEFTASE KRFLLDLIGL PSPAPSPKSS QQPTCKKALL DSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-273513310108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010917007.10.0transcription factor MYB124 isoform X1
TrEMBLA0A2H3YE120.0A0A2H3YE12_PHODC; transcription factor MYB124-like
STRINGXP_008797126.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89033847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14350.21e-106MYB family protein