PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010913096.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HSF
Protein Properties Length: 478aa    MW: 53188.9 Da    PI: 5.7938
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010913096.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.55.9e-35251152101
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl k+y++++d+++++++sws  +nsf+v+++ +fa ++Lp+yFkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F kg+k+ll++
  XP_010913096.1  25 FLLKTYDMVDDSSTDDIVSWSPAKNSFIVWNHPDFAARLLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEDFVKGQKHLLKN 110
                     9********************999*****************************************999.........****************** PP

                     XXXXX CS
    HSF_DNA-bind  97 ikrkk 101
                     i+r+k
  XP_010913096.1 111 IHRRK 115
                     ***98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.5E-6021114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.07E-3421114IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.1E-3721114IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.8E-192548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.5E-3125114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.8E-196375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.8E-197688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MEGGQPDATG GGSGGGGAGG GPAPFLLKTY DMVDDSSTDD IVSWSPAKNS FIVWNHPDFA  60
ARLLPTYFKH NNFSSFIRQL NTYGFRKIDP ERWEFANEDF VKGQKHLLKN IHRRKPIHSH  120
SHPPGSLAYS ERAALEEEIE RLAREKAALQ ADLWRFRQQQ PGTKIQLDDL ERRLAEMEQR  180
QHKMIAFLQR ALQNPRFVEN LRKMAVSSSV DFSAIHKKRR LPEMESCQEA PENSFYDDHS  240
STSKSDVGHG FHMDFCDKLK LELCPAISDN LVAASTQSSN EDNGSPHMKQ PECGVGRMEN  300
LPLSPLPLDL SDTGASICPT KNLLLPRAID EGDGHFSCHL NLTLASSSMQ IDSNQHSSRT  360
SNSVDHGVAN ASELGASNIH KDDNLGKAVG NIQSTSLDAK ATSLQEITPS SNQEPAAHEG  420
RANDVFWEQF LTERPGSSDT EEASSSFRAN PGDEQLEERK QVNENIWRNR KDMEQLTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-241211417129Heat shock factor protein 1
5d5v_B3e-241211417129Heat shock factor protein 1
5d5v_D3e-241211417129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010913096.30.0heat stress transcription factor A-5
RefseqXP_029118501.10.0heat stress transcription factor A-5
RefseqXP_029118502.10.0heat stress transcription factor A-5
SwissprotQ6K6S51e-176HSFA5_ORYSJ; Heat stress transcription factor A-5
TrEMBLA0A2H3YTR10.0A0A2H3YTR1_PHODC; heat stress transcription factor A-5-like
STRINGXP_008803687.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90003241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-127HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]