PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010910118.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | GeBP | ||||||||
Protein Properties | Length: 443aa MW: 47298.2 Da PI: 4.3098 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 107.6 | 9.3e-34 | 158 | 257 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifels 92 lfqrlw++eDei++L+G+++f++++g+ +++ d+ fye +kk+++++++k+ql+eK+rrLKkK+++ v + ++ gk+++f+++h+q i +++ XP_010910118.1 158 LFQRLWTDEDEITILKGFLEFTSRRGTtfASHQyDTGPFYEEIKKQLQLEFTKNQLIEKLRRLKKKYRNVVGRmRSMGKDFAFKSPHEQAIHDIA 252 79************************99877778**************************************97889****************** PP DUF573 93 kkiWg 97 + iW XP_010910118.1 253 RNIWS 257 ****6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 8.8E-31 | 159 | 257 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 443 aa Download sequence Send to blast |
MPSAEEEEER AVFEDDDDDD DDDDLVGDDT EEDEEEDYED DDAEAAPPLT VASAPPPPPA 60 PANPAAAEEN LNDSTPSTSS SSDRAAPNPK PNLCATADPQ NGAIPVLPIS AAAPAAAAAG 120 SLFTPSSSDP VPQPSADGKP VPVAVAAVGG GYDDSRRLFQ RLWTDEDEIT ILKGFLEFTS 180 RRGTTFASHQ YDTGPFYEEI KKQLQLEFTK NQLIEKLRRL KKKYRNVVGR MRSMGKDFAF 240 KSPHEQAIHD IARNIWSANV KRARDSDDDD LNTPNNASYT IEATSAADGA MNSERRMSRS 300 RRRFRRGTAE EAAAPTVGVP VENSVPATQV ASSEAAAIPG IIEETVKSCL SPLFKELIYS 360 ATGGPLGGGA ALLGLGLGGV GAALSPLPLS LGGSPASVPA SGTPVDEKWK QQHILELEVY 420 LKRIELVRDR IKSTLEELKS SGS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010910118.1 | 0.0 | probable transcription factor At3g04930 | ||||
TrEMBL | A0A3Q0HRM1 | 0.0 | A0A3Q0HRM1_PHODC; probable transcription factor At3g04930 | ||||
STRING | XP_008778158.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP974 | 37 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28040.1 | 1e-55 | DNA-binding storekeeper protein-related transcriptional regulator |