PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010908034.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HSF
Protein Properties Length: 467aa    MW: 52302.7 Da    PI: 5.3337
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010908034.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.84.7e-35121022101
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl k+y++++d+++++++sws +++sfvv+++ +fa ++Lp+yFkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F kg+k+ll++
  XP_010908034.1  12 FLLKTYDMVDDSSTDDIVSWSPTKTSFVVWNPPDFAAHLLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEDFIKGQKHLLKN 97 
                     9********************999*****************************************999.........****************** PP

                     XXXXX CS
    HSF_DNA-bind  97 ikrkk 101
                     i+r+k
  XP_010908034.1  98 IHRRK 102
                     ***98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.63E-348101IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.8E-388101IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.5E-628101IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.9E-3112101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-191235IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-195062IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405175IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-196375IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MEGGAGGGPA PFLLKTYDMV DDSSTDDIVS WSPTKTSFVV WNPPDFAAHL LPTYFKHNNF  60
SSFIRQLNTY GFRKIDPERW EFANEDFIKG QKHLLKNIHR RKPIHSHSHP PGLLADSEKA  120
ALEEEIERLS RERAALQADL CRFKQQQSGT KIQLEDLERR LVEMEQRQLK MIAFLQRAIH  180
NPRFVDNLVK MASSSLSVDF TAIHKKRRLP GTEYCQEASE NSLYDDHSST SKPDMGHGFH  240
TDFCHELKLE LCPAISDSNL VTVSTQSSHE DNGSLHMKQS ECGLNRMENL PLSSQPVDLS  300
DTGASVCPTK NLWLPGAADE GDGHFPCHLN LTLASSSMQL DNNQYSSRTS NTADHGVHND  360
SELSAANRSR DDNHGKSAGN IQTTSADAKA ASPQEVTPCS NQEPKDPQGR ANDAFWEKFL  420
TERPGSSDTE EASSSFRGSP GDEEQEEMKS DNEDIWRNRK DMEQLTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-22310119129Heat shock factor protein 1
5d5v_B1e-22310119129Heat shock factor protein 1
5d5v_D1e-22310119129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010908034.10.0heat stress transcription factor A-5
SwissprotQ6K6S51e-168HSFA5_ORYSJ; Heat stress transcription factor A-5
TrEMBLA0A2H3ZGR30.0A0A2H3ZGR3_PHODC; heat stress transcription factor A-5-like
STRINGXP_008813276.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90003241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-127HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]