PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010907976.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HSF
Protein Properties Length: 356aa    MW: 40303.4 Da    PI: 4.836
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010907976.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.18.8e-36361272102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k++e++ed+e++ ++sw+++ nsfvv+d+++f++ +LpkyFkhsnf+SF+RQLn+YgF+kv+ ++         weF+++ F  g+k+ll++
  XP_010907976.1  36 FLTKTFEMVEDPETDGVVSWNRDRNSFVVWDPHKFSTALLPKYFKHSNFSSFIRQLNTYGFRKVDPDR---------WEFANEGFLGGQKHLLKN 121
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     ikr+++
  XP_010907976.1 122 IKRRRN 127
                     ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.21E-3532125IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.4E-6032125IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.2E-3833125IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.8E-3236125IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.3E-193659IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.3E-197486IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407599IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.3E-198799IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MEGGSEVVVV VKEEEEAAAT SPRPMAGLNE VAPPPFLTKT FEMVEDPETD GVVSWNRDRN  60
SFVVWDPHKF STALLPKYFK HSNFSSFIRQ LNTYGFRKVD PDRWEFANEG FLGGQKHLLK  120
NIKRRRNIAQ SSQQQHETGA CVELGQFGLE TEADRLRRDC NVLMAEVLKL KQQQQNSQAQ  180
LFAMEERIQG TERKQQQTMA FLGRALKNPI FVQQLILRME QKKRFGSVGK KRRLPANLSS  240
EHPQATEAAE IELEVESLFC TMNNDSSSSS NIFQKDEVVS ESSDQKLETA CEVMWEELLD  300
EDLLTVTEVE EGGQAEIEAG MEGLGTKHWG EDVEGLVDQM VFLGSKPQRW KGGKSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-252512511120Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118124LKNIKRR
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010907976.10.0heat shock factor protein HSF30
RefseqXP_010908044.10.0heat shock factor protein HSF30
SwissprotP411521e-116HSF30_SOLPE; Heat shock factor protein HSF30
TrEMBLA0A2H3WXF10.0A0A2H3WXF1_PHODC; heat shock factor protein HSF30-like
STRINGXP_008775152.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-102heat shock transcription factor A2
Publications ? help Back to Top
  1. Scharf KD,Rose S,Thierfelder J,Nover L
    Two cDNAs for tomato heat stress transcription factors.
    Plant Physiol., 1993. 102(4): p. 1355-6
    [PMID:8278556]