PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010906563.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | ERF | ||||||||
Protein Properties | Length: 162aa MW: 17564.7 Da PI: 10.0715 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.1 | 1.9e-17 | 19 | 68 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr +k +g+WvAeIr+p +kr r++lg++ ++ Aaka++ a +l+g XP_010906563.1 19 PYRGVRMRK-WGKWVAEIREP---NKRSRIWLGSYSSPIAAAKAYDTAVFYLRG 68 59*****99.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 22.194 | 19 | 76 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-29 | 19 | 77 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.1E-34 | 19 | 82 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-12 | 20 | 31 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.7E-11 | 20 | 68 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.01E-24 | 20 | 76 | No hit | No description |
SuperFamily | SSF54171 | 7.19E-21 | 20 | 78 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 4.3E-12 | 58 | 78 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MEGESPSPPP ARKDGKERPY RGVRMRKWGK WVAEIREPNK RSRIWLGSYS SPIAAAKAYD 60 TAVFYLRGRS ARLNFPDDIS VDADADADAA MSAALIRKKA TEVGARIDAL HATAAAAAAA 120 ASPAAGAHSL GVERRRRPAY KRPDLNQKPS PESSDDDCEL FG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-14 | 16 | 80 | 2 | 67 | ATERF1 |
3gcc_A | 2e-14 | 16 | 80 | 2 | 67 | ATERF1 |
5wx9_A | 6e-14 | 20 | 81 | 15 | 77 | Ethylene-responsive transcription factor ERF096 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010906563.1 | 1e-112 | ethylene-responsive transcription factor ERF011 | ||||
Swissprot | O22174 | 2e-46 | ERF08_ARATH; Ethylene-responsive transcription factor ERF008 | ||||
TrEMBL | A0A2H3ZSE8 | 2e-78 | A0A2H3ZSE8_PHODC; ethylene-responsive transcription factor ERF011-like | ||||
STRING | XP_008795891.1 | 3e-79 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3943 | 30 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50260.1 | 4e-38 | cooperatively regulated by ethylene and jasmonate 1 |
Publications ? help Back to Top | |||
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