PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010906030.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family NF-YA
Protein Properties Length: 345aa    MW: 37402.1 Da    PI: 8.9611
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010906030.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA89.25.8e-28173234158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksr.....kpylheSRhkhAlrRpRgsgGrF 58 
                     d p+YVNaKQ+++Il+RRq+Rak+e+e+k  +k r     +pylheSRh hA+rR+RgsgGrF
  XP_010906030.1 173 DGPIYVNAKQFHGILRRRQARAKAERENKR-TKVRkfsflQPYLHESRHLHAMRRARGSGGRF 234
                     57************************9996.4544122337*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.2E-30171237IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115234.335172237IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.7E-26175234IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006169.3E-23175197IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860177197IPR018362CCAAT-binding factor, conserved site
PRINTSPR006169.3E-23211234IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MMQAAIAFKN NGGLGQISVP QAPQATLVPW WLGSQPLYEE PFGQSKSFTE NHPNGEDQLP  60
AAPRQMHHAV DPRPGPGPGP GPGPDKGGNS TTKSSVIPDS NDSGKEQKTE QHSAVISLQS  120
SMPEYQGCFE LGLGQTMVCS NYSYVDHCYG LYAPYGAQAM HGRMLLPLNM STDGPIYVNA  180
KQFHGILRRR QARAKAEREN KRTKVRKFSF LQPYLHESRH LHAMRRARGS GGRFLNTTKA  240
GTGQGGNLNT KVRVEAPPPR PAACPRSEVL QSDSGNIISA SGSSSLSGSE VSSMYAREDD  300
HFQVIERLHP SGSHPMSNMM DGVHGASIHM KWVTAADGCC DLLKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-15173236260NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010906030.10.0nuclear transcription factor Y subunit A-10 isoform X1
RefseqXP_010906031.10.0nuclear transcription factor Y subunit A-10 isoform X1
RefseqXP_019702079.10.0nuclear transcription factor Y subunit A-10 isoform X1
TrEMBLA0A2H3ZBG00.0A0A2H3ZBG0_PHODC; nuclear transcription factor Y subunit A-10-like isoform X1
STRINGXP_008811292.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23073790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.25e-29nuclear factor Y, subunit A10