PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010559143.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 239aa MW: 27104.3 Da PI: 4.6373 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.9 | 3.5e-18 | 41 | 92 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +f++eq++ Le +Fe + + +++ +LA++lgL+ rqV +WFqN+Ra++k XP_010559143.1 41 KRFSDEQIKSLELMFETETRLEPRKKVQLARELGLQPRQVAIWFQNKRARWK 92 68*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 121.5 | 4.2e-39 | 39 | 130 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +++r+s+eq+k+LE +Fe+e++Lep++Kv+lareLglqprqva+WFqn+RAR+k+kqlEk+y+ Lk++y++l+++ e+L+ke+++L++el++ XP_010559143.1 39 NQKRFSDEQIKSLELMFETETRLEPRKKVQLARELGLQPRQVAIWFQNKRARWKSKQLEKEYNILKANYNNLASQCEALKKEKQALASELQR 130 689*************************************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.47E-18 | 19 | 96 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.4E-15 | 32 | 98 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 16.957 | 34 | 94 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-18 | 40 | 101 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 6.65E-15 | 40 | 95 | No hit | No description |
Pfam | PF00046 | 2.0E-15 | 41 | 92 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 6.9E-6 | 65 | 74 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 69 | 92 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 6.9E-6 | 74 | 90 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 8.1E-16 | 94 | 136 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MSERGEYSPP AAIPAMSAVP LSCISELAAM TVKKKKCNNQ KRFSDEQIKS LELMFETETR 60 LEPRKKVQLA RELGLQPRQV AIWFQNKRAR WKSKQLEKEY NILKANYNNL ASQCEALKKE 120 KQALASELQR LNELMQKSQE EVQCCGQGAA LSSTDHESDN GENARCEPEV KHENGPWALS 180 DDDNNIKAEY FGLDEDPDLM GIVEPADSCL TSSDDWGGFK SDALLDQSSS SYPWWDFWS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00320 | DAP | Transfer from AT2G46680 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010559143.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010559143.1 | 1e-177 | PREDICTED: homeobox-leucine zipper protein ATHB-7-like | ||||
Swissprot | P46897 | 1e-100 | ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7 | ||||
TrEMBL | A0A178VMH6 | 2e-96 | A0A178VMH6_ARATH; HB-7 | ||||
TrEMBL | R0HUH2 | 2e-96 | R0HUH2_9BRAS; Uncharacterized protein | ||||
STRING | XP_010559143.1 | 1e-177 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2498 | 28 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 1e-102 | homeobox 7 |
Publications ? help Back to Top | |||
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