PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010554847.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 368aa    MW: 41669.2 Da    PI: 7.3355
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010554847.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.6e-05202221120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++Cp C k+F+r  n++ H+
  XP_010554847.1 202 FSCPLCFKTFNRYNNMQMHM 221
                     89*****************9 PP
2zf-C2H214.50.00011286308123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C +Cgk F  + + ++H +++
  XP_010554847.1 286 FMCRKCGKAFAVRGDWRTHEKNC 308
                     89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.61202224IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.1E-5202221IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.66202229IPR007087Zinc finger, C2H2
PROSITE patternPS000280204224IPR007087Zinc finger, C2H2
SuperFamilySSF576671.56E-6271306No hitNo description
Gene3DG3DSA:3.30.160.601.1E-5282306IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035549286306IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808286306IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MSDPHSNFFT GWFKPNHFPH YPNSPSSPYP SPSFFFPRGG GGLLHHRRPP SPPPSPPIRE  60
ALPLLSLSPA NKQQDHHHDQ EPSTSMDVDC DKLSPDHHHH HQYPNDDLDH DHRNTSNLND  120
GDLTVALHIG LPNPSAEEMA SVLTRSSSSE NINDRKDLEH DHHHGGDEDD DESGGGSRIS  180
RLNKGQYWIP TPSQILIGPT QFSCPLCFKT FNRYNNMQMH MWGHGSQYRK GPESLRGTQP  240
TGMLRLPCYC CSPGCRNNID HPRAKPLKDF RTLQTHYKRK HGIKPFMCRK CGKAFAVRGD  300
WRTHEKNCGK LWFCVCGSDF KHKRSLKDHI KAFGDGHGAY GVDGFDEEDD PASEVEQLDN  360
GHESMRSK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010554847.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010554847.10.0PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY11e-172ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A3P6BK251e-174A0A3P6BK25_BRACM; Uncharacterized protein
STRINGXP_010554847.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-152C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]