PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010554251.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bZIP
Protein Properties Length: 181aa    MW: 20840.4 Da    PI: 5.7682
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010554251.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.53e-1379128554
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 
                     +++rr+++NRe+ArrsR RK++ ++eL   v  L  +N+ L+++l + ++
  XP_010554251.1  79 RKQRRMISNRESARRSRMRKQKHLDELWSQVIGLRDQNRCLIDKLIRVSD 128
                     79***************************************999877665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.9E-1275139IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.00277140IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.9E-1279151No hitNo description
SuperFamilySSF579599.64E-1279126No hitNo description
PfamPF001707.5E-1179128IPR004827Basic-leucine zipper domain
CDDcd147021.58E-1680131No hitNo description
PROSITE patternPS0003608297IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MIPAEFTGLL QYVSPENAIA FPAAEFNVIQ TIMRPSPSSS SSNLMVNASS NGQELVPWSL  60
SNNSTSDEDH QQSIIIDERK QRRMISNRES ARRSRMRKQK HLDELWSQVI GLRDQNRCLI  120
DKLIRVSDSH DRVLKENSRL KEEASDLRQL ITEMRTDNND STCLSFFREL EDFDPSIKLS  180
I
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19198RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010554251.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010554251.11e-130PREDICTED: basic leucine zipper 43-like
SwissprotQ9FMC22e-29BZP43_ARATH; Basic leucine zipper 43
TrEMBLA0A397XXU17e-62A0A397XXU1_BRACM; Uncharacterized protein
STRINGXP_010554251.11e-129(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28922469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13600.16e-58basic leucine-zipper 58
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]