PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010551716.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | VOZ | ||||||||
Protein Properties | Length: 490aa MW: 54636.9 Da PI: 4.8944 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 425.6 | 7.8e-131 | 229 | 444 | 2 | 217 |
VOZ 2 ppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaaelf 96 ppsaflgpkcalwdctrpaqg++w+q ycss+hatlal e++pgt+pvlrp+gi+lkd+ll++al+ak+qgk+vgipecega+++k+pwna+elf XP_010551716.1 229 PPSAFLGPKCALWDCTRPAQGFDWYQVYCSSYHATLALSEDSPGTKPVLRPGGISLKDNLLIDALRAKTQGKNVGIPECEGAVNTKCPWNATELF 323 7********************************************************************************************** PP VOZ 97 dlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelklvd 191 dl ++egetirewlffdkpr+afesgnrkqrslpdysgrgwhesrkq+mke+gg+krsyymdpqp++sfewhl+ey+i+e+d +alyrlelkl++ XP_010551716.1 324 DLVMVEGETIREWLFFDKPRKAFESGNRKQRSLPDYSGRGWHESRKQLMKEQGGQKRSYYMDPQPPGSFEWHLFEYQIDECDLCALYRLELKLTN 418 *********************************************************************************************** PP VOZ 192 ekksakgkvskdsladlqkklgrlta 217 +kks+k+kv+kdsladlqkk+g+lta XP_010551716.1 419 TKKSPKAKVTKDSLADLQKKMGQLTA 444 ************************97 PP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048578 | Biological Process | positive regulation of long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 490 aa Download sequence Send to blast |
MSDHPKNQCT SSSHRVLVDN AKNRLNDLQE RFCNLQAARK EGRFGDLVVL EEQVYQSLRE 60 WQAELNAPSP ASSLLGGSIG LFSDEIARLL QLHDEEDDAT SALKEPTALE PESFAQGSSH 120 AEPAELKPEP FCQSPFNITF SSSQEEPTNN INTHGYQQHY AFQGFDQSSN TTSTLHDPAI 180 GNLDITSQLD YHLLEMRQQL DGNLPVKLDA TEECENYVDL DIPSNTCIPP SAFLGPKCAL 240 WDCTRPAQGF DWYQVYCSSY HATLALSEDS PGTKPVLRPG GISLKDNLLI DALRAKTQGK 300 NVGIPECEGA VNTKCPWNAT ELFDLVMVEG ETIREWLFFD KPRKAFESGN RKQRSLPDYS 360 GRGWHESRKQ LMKEQGGQKR SYYMDPQPPG SFEWHLFEYQ IDECDLCALY RLELKLTNTK 420 KSPKAKVTKD SLADLQKKMG QLTAEVISDK TSPPSKGRNK AASKGVHLAM DSPAKEDDNT 480 ITAAPSNDTP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ1 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Binds as a dimer to the palindromic sequence 5'-GCGTNNNNNNNACGC-3'. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00018 | PBM | Transfer from AT2G42400 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010551716.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. Down-regulated by far-red light (at protein level). {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010551716.1 | 0.0 | PREDICTED: transcription factor VOZ2 | ||||
Swissprot | Q9SLB9 | 0.0 | VOZ2_ARATH; Transcription factor VOZ2 | ||||
TrEMBL | V4P0Z4 | 0.0 | V4P0Z4_EUTSA; Uncharacterized protein | ||||
STRING | XP_010551716.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11060 | 25 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42400.1 | 0.0 | vascular plant one zinc finger protein 2 |
Publications ? help Back to Top | |||
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