PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010551310.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 356aa    MW: 39282.1 Da    PI: 6.4477
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010551310.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.36.5e-14167213354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h+e+ErrRR+riN+ +++Lr++lP+      +K +Ka+ L ++++++k+L
  XP_010551310.1 167 KSHSEAERRRRERINNHLSKLRSILPNT-----TKTDKASLLAEVIHHVKEL 213
                     79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.647164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-11167213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.3E-14168223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-14168224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-13170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.19E-5177216No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MCAKKEEEGD CSSGAMNNLQ KYQNNLLLPR QQQTTSSDIF GPGNNAGFTS IFPQDSVPPV  60
LPWPTPPIQP FNPIHGPDPF LLPPPPPPAS FYGSVFNRSR FGFVDGFGAT SAHHHHHHHN  120
EHLRILSEAL GPAVQAESGQ YPFGSQPELG KITAQEMMDA KALAASKSHS EAERRRRERI  180
NNHLSKLRSI LPNTTKTDKA SLLAEVIHHV KELRRQTSQI AETNPVPTET DEITVDVSEE  240
EEQQDGKFVI KASICCDDRS DLLPDLIKTL KGLRLKTLKA EIATVGCRVK NVLFVTGEEA  300
CDSDEQQQCI GSIQEALKSV MDKSSVEEPS SSGNAKRQRM SSNNGINIVE PRQEQK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172177ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010551310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010551310.10.0PREDICTED: transcription factor bHLH30
SwissprotQ9S7Y11e-136BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A1J3GAQ21e-148A0A1J3GAQ2_NOCCA; Transcription factor bHLH30
STRINGXP_010551310.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70482843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-104bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]