PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010550403.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ZF-HD
Protein Properties Length: 272aa    MW: 31282.2 Da    PI: 9.5451
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010550403.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer993.6e-3183139259
     ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                     ++vrY+ C+kNhAa++Ggh+vDGC+Efmps gee t++alkCaACgCHR+FHRr+ + 
  XP_010550403.1  83 TTVRYRGCQKNHAAATGGHVVDGCCEFMPS-GEEETPEALKCAACGCHRSFHRRDIDG 139
                     689**************************9.8888*******************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257743.0E-1976139IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.2E-2885137IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015669.2E-2786136IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.74987136IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.602.8E-27198265IPR009057Homeodomain-like
SuperFamilySSF466898.29E-17200265IPR009057Homeodomain-like
TIGRFAMsTIGR015651.4E-26207263IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MELEGKANAT FFSTIPSKTL DHHPQHTIVR PQTVLRRDPY PDPEAEPDPD PDPVSTSPPT  60
PPSPPAVSVA NRTNQRRRAR GETTVRYRGC QKNHAAATGG HVVDGCCEFM PSGEEETPEA  120
LKCAACGCHR SFHRRDIDGQ DSPAPYMYAH TTSKHVMTPT LYCSGSYRLL QPHAVHRTAE  180
IPRRSYSTED MNNVYQRRSG EEKGSRKKRF RTKINEEQKE KMKEFAERLG WRMQKKDEEE  240
VDKFCSQVNL RRQVFKVWMH NNKLKRNISH QK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A9e-212082631873ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010550403.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010550403.10.0PREDICTED: zinc-finger homeodomain protein 7-like
SwissprotQ9SVL08e-76ZHD7_ARATH; Zinc-finger homeodomain protein 7
TrEMBLA0A1J3GQM75e-79A0A1J3GQM7_NOCCA; Zinc-finger homeodomain protein 7
STRINGXP_010550403.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM138541525
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50890.11e-71homeobox protein 28