PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010548857.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | C2H2 | ||||||||
Protein Properties | Length: 254aa MW: 27770.9 Da PI: 5.0123 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.4 | 0.00024 | 138 | 159 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +Cp+C + F ++ H+r H XP_010548857.1 138 VCPYCQRIFGSWKAVFGHLRAH 159 8*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00028 | 0 | 139 | 159 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048235 | Biological Process | pollen sperm cell differentiation | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MNRRHLIFPS AILMEMSAKE NRSGDEKVEI EDEGEETMMR EIVLGLRALC LQDDFWDNPN 60 QDDNNPDKGK TLIENVVAAE EEAIRDKGKR DKEKEQTSRS GSKKRSKILK NDVAGTSRSG 120 STKKRAPELI DPPAGPLVCP YCQRIFGSWK AVFGHLRAHK ERQHHGFLPP PRFSAAGEGI 180 TIGCSGSGAA KSVIFVASNL DGSSGDGDGK SLGFDLNVAP GEDSEDSIIS NPNPKSFDLN 240 KSPPKEEDPE EDIP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010548857.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010548857.1 | 0.0 | PREDICTED: uncharacterized protein LOC104820185 | ||||
STRING | XP_010548857.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5875 | 22 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35610.1 | 7e-20 | C2H2 family protein |