PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010548768.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 288aa    MW: 32074.5 Da    PI: 8.4649
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010548768.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.7e-0578100123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C+k Fs++  L  H++ H
  XP_010548768.1  78 YTCNFCKKEFSTSQALGGHQNAH 100
                     9*******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.51E-775106No hitNo description
Gene3DG3DSA:3.30.160.601.1E-576105IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139128.2E-677102IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.0378105IPR007087Zinc finger, C2H2
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MESQVVSISS SSDSSSTKLV VAEKDSTKPN KVEPGAMNPK PGFQILSRDR IQNHHLGWGE  60
DHRHHHQEGG SSSRSRVYTC NFCKKEFSTS QALGGHQNAH KQEREWEKKR KQIELEYPSL  120
AFLHPYLNRS PFSSGSWINS LSYDNHLGSR FDAFFQKPSF YTPANNTVGY SSGYGTLAMV  180
PRVPPAADNN RVFAGKDLVL NDDDFSKNLF PSNGFPKDLH SNDVLPKDFA LRSNVGSSKS  240
LFIGDGRSRN LISIFGGNSS TTDKDLADKE DVQQKNVCAK EWGQDLSL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010548768.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010548768.10.0PREDICTED: zinc finger protein GIS-like
STRINGXP_010548768.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63631842
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27880.12e-22C2H2 family protein