PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010548768.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | C2H2 | ||||||||
Protein Properties | Length: 288aa MW: 32074.5 Da PI: 8.4649 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.9 | 3.7e-05 | 78 | 100 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k Fs++ L H++ H XP_010548768.1 78 YTCNFCKKEFSTSQALGGHQNAH 100 9*******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.51E-7 | 75 | 106 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.1E-5 | 76 | 105 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 8.2E-6 | 77 | 102 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 12.03 | 78 | 105 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 80 | 100 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MESQVVSISS SSDSSSTKLV VAEKDSTKPN KVEPGAMNPK PGFQILSRDR IQNHHLGWGE 60 DHRHHHQEGG SSSRSRVYTC NFCKKEFSTS QALGGHQNAH KQEREWEKKR KQIELEYPSL 120 AFLHPYLNRS PFSSGSWINS LSYDNHLGSR FDAFFQKPSF YTPANNTVGY SSGYGTLAMV 180 PRVPPAADNN RVFAGKDLVL NDDDFSKNLF PSNGFPKDLH SNDVLPKDFA LRSNVGSSKS 240 LFIGDGRSRN LISIFGGNSS TTDKDLADKE DVQQKNVCAK EWGQDLSL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010548768.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010548768.1 | 0.0 | PREDICTED: zinc finger protein GIS-like | ||||
STRING | XP_010548768.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6363 | 18 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G27880.1 | 2e-22 | C2H2 family protein |