PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010548761.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bZIP

Protein Properties

Length: 373aa MW: 40088.4 Da PI: 6.6967

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010548761.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	50.1	5.8e-16	179	234	2	57
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 ++ kr rr+ +NRe+ArrsR+RK+a + eLe+ v +L aeN +L k +++ + XP_010548761.1 179 RDAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRAENATLLKSFTDITQSSN 234 689*****************************************998877776655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	9.5E-18	178	242	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	5.5E-12	178	229	No hit	No description
Pfam	PF00170	1.3E-13	179	230	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.312	180	232	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	9.85E-12	182	230	No hit	No description
PROSITE pattern	PS00036	0	185	200	IPR004827	Basic-leucine zipper domain
Pfam	PF12498	6.1E-32	249	362	IPR020983	Basic leucine-zipper, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MERVFSVEEI SGETWPPAPA METADAVLGD SDGTERMNRS ASEWAFQRFI LESSFSSSAA 60 DAGAGEITEN FGTSAVGYSY QSVPVDSEEY RAYLKSKLNL ACAAVAMKRA SFTKPQETPG 120 GADSGAQASS ASQQSYPDPS KATPKKPSAP VKSITSGSEL SGDEEADGET ETPGNIGSRD 180 AKRVRRMLSN RESARRSRRR KQAHLTELET QVSQLRAENA TLLKSFTDIT QSSNNAAVEN 240 RILKANVETL RAKVKMAEET VKRITGLNSM LHAMPDVSMV SVPSFNGIPS ETSTEAVQDD 300 PKSHIFQASP NNSLATSNTN TENAAEIASA TSKALTGCKM GRTASLHRVS SLEHLQKRIR 360 STITSPFQEG LKP

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MERVFSVEEI SGETWPPAPA METADAVLGD SDGTERMNRS ASEWAFQRFI LESSFSSSAA  60
DAGAGEITEN FGTSAVGYSY QSVPVDSEEY RAYLKSKLNL ACAAVAMKRA SFTKPQETPG  120
GADSGAQASS ASQQSYPDPS KATPKKPSAP VKSITSGSEL SGDEEADGET ETPGNIGSRD  180
AKRVRRMLSN RESARRSRRR KQAHLTELET QVSQLRAENA TLLKSFTDIT QSSNNAAVEN  240
RILKANVETL RAKVKMAEET VKRITGLNSM LHAMPDVSMV SVPSFNGIPS ETSTEAVQDD  300
PKSHIFQASP NNSLATSNTN TENAAEIASA TSKALTGCKM GRTASLHRVS SLEHLQKRIR  360
STITSPFQEG LKP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	194	201	RRSRRRKQ
2	196	201	SRRRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in controlling responses to starvation (PubMed:26263501). BZIP2-BZIP63-KIN10 complex binds to the ETFQO promoter to up-regulate its transcription (PubMed:29348240). {ECO:0000269\|PubMed:26263501, ECO:0000269\|PubMed:29348240}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010548761.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Strongly repressed by glucose. {ECO:0000269\|PubMed:18841482}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010548761.1	0.0	PREDICTED: basic leucine zipper 63-like isoform X1
Swissprot	B9DGI8	1e-104	BZP63_ARATH; Basic leucine zipper 63
TrEMBL	A0A1J3HN55	1e-111	A0A1J3HN55_NOCCA; Basic leucine zipper 63
STRING	XP_010548761.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6846	27	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28770.2	1e-93	bZIP family protein

Publications ? help Back to Top
Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821] Brand LH, et al. Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA. PLoS ONE, 2013. 8(10): p. e75177 [PMID:24146751] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Mair A, et al. SnRK1-triggered switch of bZIP63 dimerization mediates the low-energy response in plants. Elife, 2016. [PMID:26263501] Pedrotti L, et al. Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness. Plant Cell, 2018. 30(2): p. 495-509 [PMID:29348240]