PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010548100.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bHLH

Protein Properties

Length: 609aa MW: 68559.2 Da PI: 5.2734

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010548100.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.5	2.4e-13	338	383	5	55
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + ++ErrRR+++N+++ Lr+l+Pk + Kl+ a+iL A++Y+k+Lq XP_010548100.1 338 NLMAERRRRKKLNDRLYALRSLVPKiS------KLDRASILGDAINYVKELQ 383 5589*******************66......****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	1.5E-18	11	161	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	16.412	333	382	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.62E-14	335	384	No hit	No description
SuperFamily	SSF47459	2.36E-17	336	395	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.9E-11	338	383	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.6E-16	339	388	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-16	340	395	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009555	Biological Process	pollen development
GO:0048658	Biological Process	anther wall tapetum development
GO:0005634	Cellular Component	nucleus
GO:0000978	Molecular Function	RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 609 aa Download sequence Send to blast
MESTMQNLLG KLRSLVGTRG WDYCVLWKLS DDQRFVKWLG CCCGGAEEII SNLDCNNNGG 60 EGFCFSGDVP SSCRDVMFHH PRTKSCELLA NLPVSIPLES GIHAETLVSN QTAWLNFLDR 120 SEPEFRQEIT CTRVLIPVPG GLVELFVTRQ VSEDQHVVDF VMGECNFLLD HTSTGALSMN 180 MMGAEEVESK PYEISGGFDH KGAKEDMNLS YDQQIRLNFL PQLGEYEAEH IKMKNDYHGL 240 GFLPENKQMD MNPFNSVVAE DEIAGMEALH NSMEAGAMDM HNVEGCDPSL LVKEQHDKET 300 FSHENGRLDS GSDCSDQMDD DDDAKFKKKT GKGSQAKNLM AERRRRKKLN DRLYALRSLV 360 PKISKLDRAS ILGDAINYVK ELQNEAKELQ EELEENLDTD DGSNRHNGNA AIGGNNDLVK 420 GFHSGLSCNT TNVPNLKQDM DHDQSSNEKG QEMEPQVDVA QVDGKEFFVK VICEYKPGGF 480 TKLMEAMDSL GLEVTNANTT RFLGLVSNVF KVERKDSEMV QAEHVRDSLL EITRNTSRGW 540 HGGGDDDDQM GNVDKNGVEY HQNYDNHHGH GHGVHHHLHD HQINQDMSSP HHHHHLLHHH 600 HIHHYHNQV

Sequence ? help Back to Top

Protein Sequence Length: 609 aa Download sequence Send to blast

MESTMQNLLG KLRSLVGTRG WDYCVLWKLS DDQRFVKWLG CCCGGAEEII SNLDCNNNGG  60
EGFCFSGDVP SSCRDVMFHH PRTKSCELLA NLPVSIPLES GIHAETLVSN QTAWLNFLDR  120
SEPEFRQEIT CTRVLIPVPG GLVELFVTRQ VSEDQHVVDF VMGECNFLLD HTSTGALSMN  180
MMGAEEVESK PYEISGGFDH KGAKEDMNLS YDQQIRLNFL PQLGEYEAEH IKMKNDYHGL  240
GFLPENKQMD MNPFNSVVAE DEIAGMEALH NSMEAGAMDM HNVEGCDPSL LVKEQHDKET  300
FSHENGRLDS GSDCSDQMDD DDDAKFKKKT GKGSQAKNLM AERRRRKKLN DRLYALRSLV  360
PKISKLDRAS ILGDAINYVK ELQNEAKELQ EELEENLDTD DGSNRHNGNA AIGGNNDLVK  420
GFHSGLSCNT TNVPNLKQDM DHDQSSNEKG QEMEPQVDVA QVDGKEFFVK VICEYKPGGF  480
TKLMEAMDSL GLEVTNANTT RFLGLVSNVF KVERKDSEMV QAEHVRDSLL EITRNTSRGW  540
HGGGDDDDQM GNVDKNGVEY HQNYDNHHGH GHGVHHHLHD HQINQDMSSP HHHHHLLHHH  600
HIHHYHNQV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	326	347	KKKTGKGSQAKNLMAERRRRKK
2	341	348	ERRRRKKL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Plays a crucial role in tapetum development. Required for male fertility and pollen differentiation, especially during the post-meiotic transcriptional regulation of microspore development within the developing anther (PubMed:12535353). Binds E-box regions in the AHL16/TEK promoter. {ECO:0000269\|PubMed:12535353, ECO:0000269\|PubMed:24804694}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010548100.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010548100.1	0.0	PREDICTED: transcription factor ABORTED MICROSPORES
Refseq	XP_010548101.1	0.0	PREDICTED: transcription factor ABORTED MICROSPORES
Swissprot	Q9ZVX2	0.0	AMS_ARATH; Transcription factor ABORTED MICROSPORES
TrEMBL	V4LJU2	0.0	V4LJU2_EUTSA; Uncharacterized protein
STRING	XP_010548100.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7589	27	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Jiang J,Zhang Z,Cao J Pollen wall development: the associated enzymes and metabolic pathways. Plant Biol (Stuttg), 2013. 15(2): p. 249-63 [PMID:23252839] Xu J, et al. ABORTED MICROSPORES Acts as a Master Regulator of Pollen Wall Formation in Arabidopsis. Plant Cell, 2014. 26(4): p. 1544-1556 [PMID:24781116] Qian H, et al. Trace concentrations of imazethapyr (IM) affect floral organs development and reproduction in Arabidopsis thaliana: IM-induced inhibition of key genes regulating anther and pollen biosynthesis. Ecotoxicology, 2015. 24(1): p. 163-71 [PMID:25348600] Xiong SX, et al. The transcription factors MS188 and AMS form a complex to activate the expression of CYP703A2 for sporopollenin biosynthesis in Arabidopsis thaliana. Plant J., 2016. 88(6): p. 936-946 [PMID:27460657] Ferguson AC, et al. Biphasic regulation of the transcription factor ABORTED MICROSPORES (AMS) is essential for tapetum and pollen development in Arabidopsis. New Phytol., 2017. 213(2): p. 778-790 [PMID:27787905] Lou Y, et al. Positive regulation of AMS by TDF1 and the formation of a TDF1-AMS complex are required for anther development in Arabidopsis thaliana. New Phytol., 2018. 217(1): p. 378-391 [PMID:28940573] Bi H,Fan W,Zhang P C4 Protein of Sweet Potato Leaf Curl Virus Regulates Brassinosteroid Signaling Pathway through Interaction with AtBIN2 and Affects Male Fertility in Arabidopsis. Front Plant Sci, 2017. 8: p. 1689 [PMID:29021807]