PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010547816.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 589aa    MW: 66764.7 Da    PI: 8.5637
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010547816.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.2e-13393439354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++ + Er+RR riN+++  Lr l+Pk      +K++Ka +L  A++YI++L
  XP_010547816.1 393 SKNIITERNRRYRINQGIYALRALVPKI-----TKMDKAGTLSDAINYINEL 439
                     566789*********************7.....7***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.6E-17128289IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000831.53E-11388444No hitNo description
PROSITE profilePS5088815.751390439IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-15392454IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-15392453IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-11393439IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-14396445IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MSVFSLSKIW YRLVDDTLFP PGFDSKKLKT LFLSSDNINK SRVGYGCLCT IVYSLNDFLL  60
ADNCCVSGDT AESSLSLSLS LSLSLSLSLP RYILQSKKKE KKRAEKRFKC WIFVVRERER  120
MRGVARVKEL LRPFVDSKDW DFCIIWKLGD DPSRFMEWVD CCCSGGYSGE HIKHENVEEE  180
GEGGEGEQKK GVSMCRDEHK KHPLRTLPCE VLSRFPLFMP LYPGIHGEVV MSKLSRWLLN  240
NQGNGSGLGS SNPLQDVFRT RVLVPVNDGL VELFSTKLKP VDQAVVDSII SSCNAFLSDL  300
RIGLKPRPLF EPFLEQTVQG SANTGVNISF DGSSSGSNPS SETQPPLPNH LELLYKQEPP  360
PCLLLSSKSK KDIAGRDNGF KSIKKVVKEM GKSKNIITER NRRYRINQGI YALRALVPKI  420
TKMDKAGTLS DAINYINELH EEKRKLEDEL KHMNDMEYIE SVAEEIMAKK PDEDPSMAAD  480
PATYQVSSEL NRKQNEVNLE VHKISEREFL IRVSHENKRD GFKRVIEALN STGLEIINVN  540
FTRLNESVMN ILNVKARKDG IEARKLRDVL FMMITSDNRR ADANPVKRE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101108KRAEKRFK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010547816.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010547816.10.0PREDICTED: transcription factor bHLH90 isoform X1
SwissprotQ0WNR21e-142BH090_ARATH; Transcription factor bHLH90
TrEMBLV4L7P91e-152V4L7P9_EUTSA; Uncharacterized protein
STRINGXP_010547816.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69852742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10610.11e-137bHLH family protein