PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010547589.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family AP2
Protein Properties Length: 546aa    MW: 60347 Da    PI: 7.1676
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010547589.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.44e-14262321155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +++Aa+a++ a++k++g
  XP_010547589.1 262 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEDKAARAYDLAALKYWG 321
                     57*******************666664478446**********99*************98 PP
2AP249.79.3e-16364415155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  XP_010547589.1 364 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 415
                     57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.2E-11262321IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-17262331IPR016177DNA-binding domain
CDDcd000181.80E-22262331No hitNo description
PROSITE profilePS5103219.072263329IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-15263330IPR001471AP2/ERF domain
SMARTSM003801.6E-28263335IPR001471AP2/ERF domain
PRINTSPR003672.5E-6264275IPR001471AP2/ERF domain
PfamPF008474.9E-10364415IPR001471AP2/ERF domain
CDDcd000181.14E-11364425No hitNo description
SuperFamilySSF541718.5E-18364425IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.9E-18365424IPR001471AP2/ERF domain
PROSITE profilePS5103219.151365423IPR001471AP2/ERF domain
SMARTSM003807.7E-32365429IPR001471AP2/ERF domain
PRINTSPR003672.5E-6405425IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010080Biological Processregulation of floral meristem growth
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0035265Biological Processorgan growth
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MAPMTNWLAF SLSPMEMPRS SDQSQFMSYL DASSAASPHY LLDNFYGWTN QKPQDLFKEE  60
AQITASMANS TILTNFVDPQ IHTHNPIPKL EDFLGDSSSI VRYSDSQTET QDSSLTQIYD  120
THHHYQRQAA TAGFFSDHHD FKAMAGFQTA FSTNSGSEVD DSASIGRTHL AGEFLGHVAD  180
SSGPELVFPG VCNNGGALSL GVNSIPKSDI NNSKAIADTF SSRNIDRNIN GKTVSVNDKA  240
VVAVETSDCS KKISDTFGQR TSIYRGVTRH RWTGRYEAHL WDNSCRREGQ ARKGRQVYLG  300
GYDKEDKAAR AYDLAALKYW GSTATTNFPI SNYAKELEEM KRLTKQEFIA SLRRKSSGFS  360
RGASIYRGVT RHHQQGRWQA RIGRVAGNKD LYLGTFATEE EAAEAYDIAA IKFRGVNAVT  420
NFEMSRYDVE TIMKSSLPIG GAAKRLKLSL ESASCEPKPV VVGHHHHLHQ LLSGSPVQSQ  480
IPCGIPFEPA TLFHHQNLFQ HFPAGSFGAT LASDSSGSNS TVQGAMPVME PNQAEFFLWP  540
NHHQSY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00504DAPTransfer from AT5G10510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010547589.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010547589.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU20.0AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A1J3E7580.0A0A1J3E758_NOCCA; AP2-like ethylene-responsive transcription factor AIL6
STRINGXP_010547589.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33332765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.20.0AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]