PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010545873.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bHLH

Protein Properties

Length: 503aa MW: 55924.6 Da PI: 8.282

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010545873.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.4	4.1e-11	329	374	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h + Er+RR+++N++f+ Lr+llP+ +K +Ka++L A e + sLq XP_010545873.1 329 HMISERKRREKLNESFQALRSLLPPG-----TKKDKASVLAGAREQLASLQ 374 8899******************97.....79********99998887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.773	324	373	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.15E-15	326	391	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.00E-11	326	377	No hit	No description
Gene3D	G3DSA:4.10.280.10	8.9E-15	328	391	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-8	329	374	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.8E-12	330	379	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010200	Biological Process	response to chitin
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 503 aa Download sequence Send to blast
MDAAFMADDP NTRSQIFGSL MQSFGCVYVC LWSYFPRPSN YLISLDGYYN EAPEEPSTSS 60 ASLVRRLFDE YRQTVIPLED GRVPGMAFAK NRPYVELRPP EILRLACNVA QRLFYHEAKI 120 RTVVFMGCRS GEIELGMTYD AAQMKIEAGL REWFPEDFQR KSPIQSEYPL PPPPSSSSSS 180 LRSLDSPNIS EYSSLLFPVT VTVNPSTTLL TETVNPPLVP ITTSMIQEGQ QSLHAIRQRE 240 EEAMTRAILA VLSAPSSPPS TSSSPKKLKP RVSAFKRYFS GSGSGGGGSV NLRKQTSMTK 300 RAIAFYGRLN VLRRERLVLG GPTATQLHHM ISERKRREKL NESFQALRSL LPPGTKKDKA 360 SVLAGAREQL ASLQSEVTRL SSRARELEAE LTGESEIESL QPGERFSVRT RQVPESTSRE 420 RTVDLRVVLS GENVSVDDLV IRLLEFLKPI TNVSLVSVEA QIRTEEGGDS SSVVASLRLK 480 IEGEWDESAF QEAVKRVIAD LAH

Sequence ? help Back to Top

Protein Sequence Length: 503 aa Download sequence Send to blast

MDAAFMADDP NTRSQIFGSL MQSFGCVYVC LWSYFPRPSN YLISLDGYYN EAPEEPSTSS  60
ASLVRRLFDE YRQTVIPLED GRVPGMAFAK NRPYVELRPP EILRLACNVA QRLFYHEAKI  120
RTVVFMGCRS GEIELGMTYD AAQMKIEAGL REWFPEDFQR KSPIQSEYPL PPPPSSSSSS  180
LRSLDSPNIS EYSSLLFPVT VTVNPSTTLL TETVNPPLVP ITTSMIQEGQ QSLHAIRQRE  240
EEAMTRAILA VLSAPSSPPS TSSSPKKLKP RVSAFKRYFS GSGSGGGGSV NLRKQTSMTK  300
RAIAFYGRLN VLRRERLVLG GPTATQLHHM ISERKRREKL NESFQALRSL LPPGTKKDKA  360
SVLAGAREQL ASLQSEVTRL SSRARELEAE LTGESEIESL QPGERFSVRT RQVPESTSRE  420
RTVDLRVVLS GENVSVDDLV IRLLEFLKPI TNVSLVSVEA QIRTEEGGDS SSVVASLRLK  480
IEGEWDESAF QEAVKRVIAD LAH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	332	337	ERKRRE
2	333	338	RKRREK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010545873.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010545873.1	0.0	PREDICTED: putative transcription factor bHLH041
Refseq	XP_019058562.1	0.0	PREDICTED: putative transcription factor bHLH041
Swissprot	Q9LTS4	1e-153	BH041_ARATH; Putative transcription factor bHLH041
TrEMBL	A0A1P8BAL1	0.0	A0A1P8BAL1_ARATH; Basic helix-loop-helix (BHLH) DNA-binding family protein
STRING	XP_010545873.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7060	28	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	1e-138	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]