PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010545669.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HD-ZIP
Protein Properties Length: 839aa    MW: 92093.3 Da    PI: 6.0823
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010545669.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.72.1e-181775357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  XP_010545669.1 17 KYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 75
                    5679*****************************************************97 PP
2START170.21.3e-531613692205
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+++d+  W + ++++++l+v+ +   g+++l 
  XP_010545669.1 161 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCTGVAARACGLVGLEPT-RVAEIVKDRSSWFRECRAVDVLNVLPTTngGTIELL 254
                     7899******************************************************.7777777777***************87667****** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++l+a+++l+p Rdf+ +Ry+  l++g++v++++S+ ++q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h+dl++++++++lr+l+
  XP_010545669.1 255 YMQLYAPTTLAPpRDFWLLRYTSVLEDGSLVVCERSLKNTQSGPNmppVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEASSVPEVLRPLY 349
                     ******************************************99998899********************************************* PP

                     HHHHHHHHHHHHHHTXXXXX CS
           START 186 ksglaegaktwvatlqrqce 205
                     +s  + ++kt++a l+++++
  XP_010545669.1 350 ESPKVLAQKTTMASLRQLKQ 369
                     ***************99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.4671276IPR001356Homeobox domain
SMARTSM003891.2E-151480IPR001356Homeobox domain
SuperFamilySSF466891.11E-161679IPR009057Homeodomain-like
CDDcd000861.32E-161777No hitNo description
PfamPF000465.8E-161875IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.5E-181975IPR009057Homeodomain-like
CDDcd146863.56E-669108No hitNo description
PROSITE profilePS5084826.025151399IPR002913START domain
CDDcd088751.06E-73155371No hitNo description
SuperFamilySSF559612.33E-36160372No hitNo description
SMARTSM002341.3E-38160370IPR002913START domain
Gene3DG3DSA:3.30.530.202.1E-22160365IPR023393START-like domain
PfamPF018525.6E-51161369IPR002913START domain
PfamPF086701.6E-51697838IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 839 aa     Download sequence    Send to blast
MEMSYKDGKA GSLDNGKYVR YTPEQVEALE RLYHDCPKPS SIRRQQLIRE CPILSNIEPK  60
QIKVWFQNRR CREKQRKEAS RLQSVNRKMT AMNKLLMEEN DRLQKQVSQL VYENSYFRQH  120
TQNTSLPAKD PSCESAVTSG QQQLASQNPP RDASPAGLLS IAEETLAEFL SKATGTAVEW  180
VQMPGMKPGP DSIGIIAISH GCTGVAARAC GLVGLEPTRV AEIVKDRSSW FRECRAVDVL  240
NVLPTTNGGT IELLYMQLYA PTTLAPPRDF WLLRYTSVLE DGSLVVCERS LKNTQSGPNM  300
PPVQHFVRAE MLPSGYLIRP CEGGGSIIHI VDHMDLEASS VPEVLRPLYE SPKVLAQKTT  360
MASLRQLKQI AQEVSQTSVS NGWSRRPAAL RALSQRLSRG FNEAVNGFTD EGWSVIGDGM  420
DDVTILVNSS PDKLMDLNLT FANNGFPHVS NAVLCAKASM LLQNVSPAIL LRFLREHRSE  480
WADNSIDAYS AASIKLGPCS LPGAWVGGCG GQVILPLAHT IEHEEFLEVI KLEGLGHSPE  540
DAIVPRDIFL LQLCSGIDES AVGTCGELIF APIDASFADD APLLPSGFRI IPLDLGKQEV  600
PSPNRTLDLA SALEVGSAGT KASTDGSGNS SCTRSVMTIA FEFAFESHMQ DHVVSMARQY  660
VRSIISTVQR VALALSPSHM SSQAGLLTSL GTPEAQTLAR WICHSYRCFM GVELLKSSDG  720
NESILKNLWN HSDAIMCCSL KALPVFTFAN QAGLDMLETT LVALQDISLE KIFDDNGRKT  780
LCSEFPQIMQ QGFACLRGGI CLSSMGRPVS YDKAVAWKVL NEEENAHCIC FVFINWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010545669.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010545670.10.0PREDICTED: homeobox-leucine zipper protein ATHB-15 isoform X1
RefseqXP_010545671.10.0PREDICTED: homeobox-leucine zipper protein ATHB-15 isoform X1
RefseqXP_010545672.10.0PREDICTED: homeobox-leucine zipper protein ATHB-15 isoform X1
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLB3H4G80.0B3H4G8_ARATH; Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein
STRINGXP_010545669.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20222678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]