PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010545359.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C3H
Protein Properties Length: 754aa    MW: 82084.5 Da    PI: 5.618
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010545359.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.24.3e-06478498525
                     --SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                     +C++f   G+C++Gd+C F+H
  XP_010545359.1 478 PCNNFTTKGFCHRGDNCLFSH 498
                     7******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.577419446IPR000571Zinc finger, CCCH-type
SMARTSM003560.17420445IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5420444IPR000571Zinc finger, CCCH-type
SMARTSM003560.0027448474IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.549448475IPR000571Zinc finger, CCCH-type
SMARTSM003561.1476500IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-5477500IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.976478501IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 754 aa     Download sequence    Send to blast
MESTVEAPFS LRRRRSHLPS RTYLSLVRIF SGFSGKSRVS LATPSVLQEL VLRSDDNVDN  60
EAAQVSLKET CEPGEICPPS GNTEPENSSM LEARTPQDQS GAAQCRKDVG LGESRDVPDY  120
TENVMADKMD TEYLENSLMP GNNFDATDLQ DGMDGRSQKI MDELELMLNE EDDLLPEDCM  180
NLLEILEVSD GSSNMIASLE DNAKEPLDPR ITSEIQGDLE EGNKKMSESF DLPPGKGMAE  240
DGNSSHGFAT NVTQMIRDED IEEGEIFGDV NINYDDLHLG EDEPVERMDE EQVTDDTIDD  300
GGTNDIYSAN RQNLSSIPSN AVVSLPEVVC EKGRKLDAEV GNLDDHMTDD EKVKSRGSGS  360
HETSCKDKNS NVGSAKKKRS ARSEKNNSKK KANFRKRRAE ERRLLGVKRL KLKPVVAKPK  420
VIKYCCHYLK GRCQKGENCR YSHDIVPLTK SSPCCYFATQ SCMKGEDCPF DHDLSKYPCN  480
NFTTKGFCHR GDNCLFSHKG TPGCALDASK SGTPNASGPS SLNSVSAASF SFGVSPQNTN  540
KPTTTKPPTA FPSRLSSPVS FMKTSSPKTN EHEKAGTPPR KPSVPPKGIS FLSLDKTSSG  600
NIPKMPQHEQ ASSPSVENIL KDALQKTTSK TTPITGNPLP PASSSSPPKG ISFLSFGSDR  660
FKGKTLANAP DGQHERQMSS QPSTSGQLKA TPIFQTQKTL ISALKLAAEL DPGKTKKCTN  720
DPAAVNKLDT DNKGDAAHSR NNSSKILEFL ASLS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1376397KKRSARSEKNNSKKKANFRKRR
2402410RLLGVKRLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010545359.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010545359.10.0PREDICTED: zinc finger CCCH domain-containing protein 65 isoform X1
STRINGXP_010545359.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM121601516