PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010542997.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C3H
Protein Properties Length: 419aa    MW: 45821.5 Da    PI: 8.4101
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010542997.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.33.9e-114773127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                    ++++ C+f++rtG C yG++C+++H+p
  XP_010542997.1 47 PGERDCPFYLRTGLCGYGSNCRYNHPP 73
                    5789*********************97 PP
2zf-CCCH375.9e-1292116327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C +f++tGtCkyG++Ck++H++
  XP_010542997.1  92 QPDCEYFLKTGTCKYGPTCKYHHPK 116
                     789********************96 PP
3zf-CCCH36.11.1e-11137161327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C +++rtGtCk+G  CkF+H++
  XP_010542997.1 137 EKSCTYYLRTGTCKFGVACKFHHPQ 161
                     667********************97 PP
4zf-CCCH35.51.7e-11267291327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++Crff+ +GtC+yGd Ck++H++
  XP_010542997.1 267 QPECRFFMSSGTCRYGDDCKYNHPK 291
                     689********************96 PP
5zf-CCCH34.73e-11311336126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ++++ C +f+++G Ck+G++CkF H+
  XP_010542997.1 311 PGQPACANFMAYGSCKFGPNCKFDHS 336
                     57899********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.5584674IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-64673IPR000571Zinc finger, CCCH-type
PfamPF006429.0E-94873IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-55072IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-45271IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.43289117IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-689116IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-992116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-693117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.2E-595115IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-4134161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.07134162IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-6136162IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-9136161IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.9E-5139160IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.478264292IPR000571Zinc finger, CCCH-type
SMARTSM003568.0E-6265291IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6265293IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-9267291IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.7E-6270291IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.981310338IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-6310337IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-8312336IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.07E-5312339IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4316336IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MRPMSQTQQD QSSTGSNRSS VKIQDAFRRI KLNEDGDAQS SPYPDRPGER DCPFYLRTGL  60
CGYGSNCRYN HPPFVSQAIF YYKDELPERV GQPDCEYFLK TGTCKYGPTC KYHHPKDRNG  120
AGPVLFNVLG FPIRQGEKSC TYYLRTGTCK FGVACKFHHP QPVNEPSAAY GLSSYSSVGL  180
PYLGGGLTMV SLPPATYGSV LSRQAPQAYV PVMVSPSQGI LPPQGWATYT ATSNPIYNVK  240
DQPDSSSSAS VPVAVTLNQS LPERHDQPEC RFFMSSGTCR YGDDCKYNHP KERISQSPPN  300
LLNPVVLPSR PGQPACANFM AYGSCKFGPN CKFDHSLPPY PFNMALTVPP LPYASPVSTH  360
MSISPQTRSD SPALSDGKPT EKNRNSEAVS KQVVDSEAQF SSEKTSCSMI TSVKSSSVA
Functional Description ? help Back to Top
Source Description
UniProtPossesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010542997.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010542997.10.0PREDICTED: zinc finger CCCH domain-containing protein 3-like
SwissprotQ94AD90.0C3H3_ARATH; Zinc finger CCCH domain-containing protein 3
TrEMBLD7KEA00.0D7KEA0_ARALL; Predicted protein
STRINGXP_010542997.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23802675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-171C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]