PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010538892.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

NAC

Protein Properties

Length: 325aa MW: 37239.5 Da PI: 7.3555

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010538892.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.9	7.9e-53	9	138	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +ppGfrFhPt+eel+++yLkkk++ +k+e+ evi+evd++k+ePw+L++ ++ + ++ewyfFs++d+ky+tg+r+nrat+sg+Wkatg+dk + XP_010538892.1 9 VPPGFRFHPTEEELLHYYLKKKLSYQKFEM-EVIREVDLNKIEPWELQErcRIGStPQNEWYFFSHKDRKYPTGSRTNRATSSGFWKATGRDKCI 102 69**************************.99**********963433332556********************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129 + +++g++ktLvfykgrap+g+ktdW+mheyrle XP_010538892.1 103 RN-CYKKIGMRKTLVFYKGRAPHGQKTDWIMHEYRLE 138 9.999****************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.59E-58	8	161	IPR003441	NAC domain
PROSITE profile	PS51005	56.758	9	161	IPR003441	NAC domain
Pfam	PF02365	2.5E-27	10	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MGWSNNGGVP PGFRFHPTEE ELLHYYLKKK LSYQKFEMEV IREVDLNKIE PWELQERCRI 60 GSTPQNEWYF FSHKDRKYPT GSRTNRATSS GFWKATGRDK CIRNCYKKIG MRKTLVFYKG 120 RAPHGQKTDW IMHEYRLEDN GDDPQANPSE DGWVVCRAFK KKNLFKVRNE EGSSINSSEQ 180 DNNGLQARGF MHRDSQYHLH QTTFELNKPE LALHYPPIST MFQSQAIIPS SHKPPPSIVY 240 DYSSGLPRDC SHESAASEGL QYGQGCEPTG LEVGTGEWAM LDRLVTYHMG NEDSSRGMTN 300 NSSSVQPDGN QLSLGGEMDF WGFAK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	9e-50	9	163	15	170	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269\|PubMed:20197506}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010538892.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010538892.1	0.0	PREDICTED: protein BEARSKIN2-like
Swissprot	Q9SV87	1e-174	BRN2_ARATH; Protein BEARSKIN2
TrEMBL	D7LY43	1e-173	D7LY43_ARALL; Predicted protein
STRING	XP_010538892.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5213	26	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G10350.1	1e-160	NAC domain containing protein 70

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Kamiya M, et al. Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis. Development, 2016. 143(21): p. 4063-4072 [PMID:27803060]