PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010538410.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 187aa    MW: 20846.3 Da    PI: 7.0782
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010538410.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.37.7e-184594255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ++GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  XP_010538410.1 45 SFRGVRMRQ-WGKWVSEIREPRK---KSRIWLGTFSTPEMAARAHDVAALAIKG 94
                    69****998.**********843...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.0E-124594IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-3145103IPR001471AP2/ERF domain
SMARTSM003806.9E-3745108IPR001471AP2/ERF domain
PROSITE profilePS5103222.33945102IPR001471AP2/ERF domain
CDDcd000184.17E-3146104No hitNo description
PRINTSPR003675.2E-104657IPR001471AP2/ERF domain
SuperFamilySSF541715.56E-2146103IPR016177DNA-binding domain
PRINTSPR003675.2E-106884IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MQQHQPAMAS ERMIRKNPNK KRREKDDGDG DTDSREQRGV SERTSFRGVR MRQWGKWVSE  60
IREPRKKSRI WLGTFSTPEM AARAHDVAAL AIKGGGAHLN FPELACHLPR PSSSDPKDIR  120
AAAAAAAAEL LRSPESTVTS SPSLTSVADD AFSDLPDLFL DDLTHKINGF WDSLPYGEEE  180
PFFLANQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1638102672Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11924KKRREK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00436DAPTransfer from AT4G16750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010538410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010538410.11e-136PREDICTED: ethylene-responsive transcription factor ERF039-like
SwissprotQ9SUK82e-67ERF39_ARATH; Ethylene-responsive transcription factor ERF039
TrEMBLD7LIJ57e-71D7LIJ5_ARALL; Uncharacterized protein
STRINGXP_010538410.11e-136(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24922374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16750.12e-56ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]