PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010537652.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 316aa    MW: 35744.5 Da    PI: 4.9058
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010537652.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31e-1999149155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+G+r+++ +grW+AeIrdp++     r++lg+f tae+Aa+a++  +k+++g
  XP_010537652.1  99 SRYRGIRRRP-WGRWAAEIRDPTK---GVRVWLGTFNTAEDAARAYDSEAKRIRG 149
                     79********.**********964...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.96E-2299158IPR016177DNA-binding domain
CDDcd000181.49E-3299159No hitNo description
PfamPF008471.7E-1299149IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.9E-32100158IPR001471AP2/ERF domain
PROSITE profilePS5103224.184100157IPR001471AP2/ERF domain
SMARTSM003801.5E-36100163IPR001471AP2/ERF domain
PRINTSPR003674.1E-11101112IPR001471AP2/ERF domain
PRINTSPR003674.1E-11123139IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009873Biological Processethylene-activated signaling pathway
GO:0034059Biological Processresponse to anoxia
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MCGGAIISEY ISPARSGRLT ADDLWSDRRK TAKSGKPWRR NDVVDLTFED FDEYESDEED  60
DLGGFSGVKS FAFSASSKST VSGNKQKDNK ITDAMMKKSR YRGIRRRPWG RWAAEIRDPT  120
KGVRVWLGTF NTAEDAARAY DSEAKRIRGP KAKLNFPDTS FTSSRKRKVA PRIAKPVNTE  180
QQNSSLDHCN VAEKPRVNNH HLGSDKNSLQ QTDGSDSFDC LDLLWEEKNV ETIEIPSFDT  240
EWFEDVTNPT KKLKADDSES NGKFSTLSEE LLAFEKETDC FFQMPYGVGN CDSSFLNNLL  300
DGDNAMDLWN FEEGVF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-21101157360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00230DAPTransfer from AT1G72360Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010537652.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010537652.10.0PREDICTED: ethylene-responsive transcription factor ERF073
SwissprotQ8H0T56e-58ERF73_ARATH; Ethylene-responsive transcription factor ERF073
TrEMBLV4JRP23e-79V4JRP2_EUTSA; Uncharacterized protein
STRINGXP_010537652.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137371625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.28e-49ERF family protein
Publications ? help Back to Top
  1. Yang CY,Huang YC,Ou SL
    ERF73/HRE1 is involved in H2O2 production via hypoxia-inducible Rboh gene expression in hypoxia signaling.
    Protoplasma, 2017. 254(4): p. 1705-1714
    [PMID:27995331]