PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010536863.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 276aa    MW: 30812.5 Da    PI: 10.9124
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010536863.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.11.2e-11107152555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     h + Er+RR+++N++f+ Lr llP+      +K +Ka+ Le A e I  Lq
  XP_010536863.1 107 HMITERKRREKLNESFQALRLLLPPT-----TKKDKASLLEGAREQITRLQ 152
                     8899*********************9.....8***************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.291102151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.94E-9104156No hitNo description
SuperFamilySSF474593.27E-15104169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-15106167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-9107152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-10108157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MIHEGQQSSL LAIRQREEEA MTRAILAVLT APSNVLSTST SSSPKKVIPR ASAFKRYSTG  60
VSVSGASRLR KQINMTKRAI AFYRGLDVIR RERLDMGGSP TATQLHHMIT ERKRREKLNE  120
SFQALRLLLP PTTKKDKASL LEGAREQITR LQSEVSRLKE RNRELGAEFV GEREMESLGK  180
GQRLTVGIKR REKTAGLRVV VRGENVSVDD LIIRLIEFLK RVSNVSLVSI EARTLTQEGG  240
DSSPLLLLSL GLMIEGEWDE SALQEAVRRV IADVAD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110115ERKRRE
2111116RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010536863.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010536863.10.0PREDICTED: putative transcription factor bHLH041
SwissprotQ9LTS42e-88BH041_ARATH; Putative transcription factor bHLH041
TrEMBLA0A1P8BAL13e-85A0A1P8BAL1_ARATH; Basic helix-loop-helix (BHLH) DNA-binding family protein
STRINGXP_010536863.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70602840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.11e-82bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]