PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010536593.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | NAC | ||||||||
Protein Properties | Length: 209aa MW: 24884 Da PI: 4.7536 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 109.4 | 4.2e-34 | 24 | 147 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhP++e+lv eyL+kkv ++++++ ++e++ y+++PwdL ++++e yfF+k++++ +rk+r t+sgyW++ ++ e+ ++ XP_010536593.1 24 LPPGFRFHPEEEDLVFEYLAKKVLNRPMDF--NLPEIESYNADPWDLL---GEKNNEAYFFAKKQER----ERKRRETDSGYWEECEEEMEMEAR 109 79*************************999..69*************6...55788******99886....599****************99998 PP NAM 96 kgel.....vglkktLvfykgrapkgektdWvmheyrl 128 ++++ +g+kkt+vf+ g++++g+ t W+mhe+rl XP_010536593.1 110 DQNNyglgfKGMKKTFVFFIGKRSRGSITPWLMHEFRL 147 665578888***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.75E-34 | 12 | 176 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 35.945 | 24 | 176 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-21 | 25 | 147 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MKKKSYHMDI SMQRFVVNGR TVRLPPGFRF HPEEEDLVFE YLAKKVLNRP MDFNLPEIES 60 YNADPWDLLG EKNNEAYFFA KKQERERKRR ETDSGYWEEC EEEMEMEARD QNNYGLGFKG 120 MKKTFVFFIG KRSRGSITPW LMHEFRLVYV ANARSPCPIR LKDAIDKWRA IKVFAKSDES 180 EEEEMEEDDF TASDESDGEE VVQNGSVWW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-21 | 22 | 182 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-21 | 22 | 182 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-21 | 22 | 182 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-21 | 22 | 182 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-21 | 22 | 182 | 15 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-21 | 22 | 182 | 15 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 85 | 90 | ERKRRE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010536593.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010536593.1 | 1e-155 | PREDICTED: NAC domain-containing protein 83 | ||||
Refseq | XP_019057928.1 | 1e-155 | PREDICTED: NAC domain-containing protein 83 | ||||
TrEMBL | A0A178UQH2 | 3e-70 | A0A178UQH2_ARATH; NAC097 | ||||
TrEMBL | Q9FGQ1 | 3e-70 | Q9FGQ1_ARATH; NAC domain containing protein 97 | ||||
STRING | XP_010536593.1 | 1e-154 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14666 | 18 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50820.1 | 1e-63 | NAC domain containing protein 97 |