PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010535334.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GATA
Protein Properties Length: 308aa    MW: 33598.2 Da    PI: 6.3453
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010535334.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA45.69.9e-15220256135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++C  ++  Tp++Rrgp+g++tLCnaCGl++  kg+
  XP_010535334.1 220 CTHCSISSkcTPMMRRGPSGPRTLCNACGLFWSNKGT 256
                     *****9999************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009797.0E-1285120IPR010399Tify domain
PROSITE profilePS5132013.66385120IPR010399Tify domain
PfamPF062001.2E-1187119IPR010399Tify domain
PROSITE profilePS5101711.806152194IPR010402CCT domain
PfamPF062035.8E-14152194IPR010402CCT domain
PROSITE profilePS5011410.172214273IPR000679Zinc finger, GATA-type
SMARTSM004011.4E-16214267IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.57E-11215263No hitNo description
Gene3DG3DSA:3.30.50.104.9E-15218261IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.78E-14219263No hitNo description
PfamPF003205.2E-12220256IPR000679Zinc finger, GATA-type
PROSITE patternPS003440220247IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MYGPHQQAVN IANQMGSAGD AGAAREDDGS AVRSGHIAYD DGVSMDEIPH HDSVFVHGGV  60
SELVPRGSEL VPHRSEGSDL MVSRELEEPN QLTLSFRGQV YVFDAVGPDK VDAVLSLLGG  120
CPEVSPGLQG MELPQQNSPT FDYQNRCSLP QRAQSLDRFR KKRDARCFQK KVRYGVRQEV  180
ALRMSRNKGQ FTSSKKPDSA YNSGTDQEST QDDGHPEISC THCSISSKCT PMMRRGPSGP  240
RTLCNACGLF WSNKGTLRDL SKKIEDNQLP TPKQGEGEAE ADNSNTEIAM VHGHNTLVSV  300
ASRDNSSF
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00451DAPTransfer from AT4G24470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010535334.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010535334.10.0PREDICTED: GATA transcription factor 25-like
SwissprotQ9LRH61e-143GAT25_ARATH; GATA transcription factor 25
TrEMBLR0H0401e-146R0H040_9BRAS; Uncharacterized protein
STRINGXP_010535334.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50062543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.21e-143GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]