PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010534870.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | Whirly | ||||||||
Protein Properties | Length: 234aa MW: 25648.4 Da PI: 10.5391 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 211.1 | 1.1e-65 | 59 | 194 | 2 | 137 |
Whirly 2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkv 96 v+k+kaal+v++v+p+f ++dsg ++++r+G+l+l++++a++erkydW+k+q+falsatev++l+++++ +s+effhdp++k+s++G+v+k+l+v XP_010534870.1 59 VFKGKAALSVEPVLPSFIKVDSGDFRIERRGSLMLTFMPAIGERKYDWGKRQRFALSATEVGSLISMGPSNSSEFFHDPSMKSSGAGQVKKSLSV 153 9********************************************************************************************** PP Whirly 97 ePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137 +Pl+dGsG+f++lsv+ns++k+ e+f+vPv+ aefav++++ XP_010534870.1 154 KPLADGSGYFISLSVNNSILKTMERFTVPVTTAEFAVMKTA 194 ***************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 1.3E-73 | 47 | 212 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 1.57E-65 | 51 | 222 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 2.9E-58 | 59 | 193 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MMLKQARSLL SRKFCNPSNS LVGEGSSFRS FASWADSSST RRGFSLGKST GRVFAPYAVF 60 KGKAALSVEP VLPSFIKVDS GDFRIERRGS LMLTFMPAIG ERKYDWGKRQ RFALSATEVG 120 SLISMGPSNS SEFFHDPSMK SSGAGQVKKS LSVKPLADGS GYFISLSVNN SILKTMERFT 180 VPVTTAEFAV MKTACSFALP HIMGWDRLTS QVRVGTEGNN SKVDPQLLEI EWDK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4kop_A | 2e-95 | 47 | 213 | 5 | 171 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_B | 2e-95 | 47 | 213 | 5 | 171 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_C | 2e-95 | 47 | 213 | 5 | 171 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_D | 2e-95 | 47 | 213 | 5 | 171 | Single-stranded DNA-binding protein WHY2, mitochondrial |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that associates with mitochondrial DNA and may play a role in the regulation of the gene expression machinery. Seems also to be required to prevent break-induced DNA rearrangements in the mitochondrial genome. Can bind to melt double-stranded DNA in vivo. {ECO:0000269|PubMed:18423020, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:22762281}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010534870.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010534870.1 | 1e-171 | PREDICTED: single-stranded DNA-binding protein WHY2, mitochondrial | ||||
Swissprot | Q8VYF7 | 1e-115 | WHY2_ARATH; Single-stranded DNA-binding protein WHY2, mitochondrial | ||||
TrEMBL | A0A178W9L5 | 1e-113 | A0A178W9L5_ARATH; WHY2 | ||||
STRING | XP_010534870.1 | 1e-171 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12358 | 27 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71260.1 | 1e-117 | WHIRLY 2 |