PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010534402.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | SBP | ||||||||
Protein Properties | Length: 1046aa MW: 116085 Da PI: 8.4129 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 127.5 | 5.3e-40 | 143 | 219 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cqv+ C++dls+ak+yhrrhkvCevhska+++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+ XP_010534402.1 143 CQVDCCTEDLSTAKDYHRRHKVCEVHSKASKALVGNQMQRFCQQCSRFHLLSEFDEGKRSCRRRLAGHNRRRRKTQP 219 **************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 6.2E-33 | 136 | 204 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.043 | 140 | 217 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.31E-36 | 141 | 222 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.1E-28 | 143 | 216 | IPR004333 | Transcription factor, SBP-box |
CDD | cd00204 | 3.19E-7 | 804 | 940 | No hit | No description |
SuperFamily | SSF48403 | 4.97E-7 | 804 | 942 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 2.1E-6 | 807 | 945 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 8.534 | 887 | 940 | IPR020683 | Ankyrin repeat-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1046 aa Download sequence Send to blast |
MDMDEVGAQV AAPVFIQQSI SPIGRKRDLY YQIPNLHPHW LPQPQTHTLQ LRDDWNPKTW 60 DWDCRRFEAK PVDSEVVRLD VSVKSSSNSG LTSRNGGGES EGDERSLDLN LGSCPNPVEE 120 TQPNRPNKKV RPGSPGGSNY PKCQVDCCTE DLSTAKDYHR RHKVCEVHSK ASKALVGNQM 180 QRFCQQCSRF HLLSEFDEGK RSCRRRLAGH NRRRRKTQPE EIRTRAVVPG NRDNNSNPNP 240 NMDLVALLTA LACAQAAGRN EVKPIESPTV PDGEQLLQML NKINSLPLPT DLFSKLNNIG 300 GLAGKNLQHS LANPQNDTNG TSQSTMDLLA VLSSTLASSS PDALALLSQK RDEVNNSDKT 360 KLASSDHPGI TANVEKRILD VPSAGGERSS SSHQSPSQDS DSHVQDTRSS LSLQLFTSSP 420 DNESGPTVAF SRKYYSSASS NPLEDRSPSS SPVMQELFPL QTSPETMRLK NEKNTGFRTG 480 CLPLELFGAS NRGAENNIFK GFGHQSGYAS SGSDNSPPSL NSDSQDRTGR IVFKLLGKDP 540 SHLPGTLRTQ IYNWLTNIPS EMESYIRPGC VVLSVYVAMS ASAWQQLEEN LQERVRFLLQ 600 DSRSDFWRNS RFLVNTGRRV ASYKDGKIRL SKSWRTWNSP ELISVSPVAV VAGEETTLLV 660 KGRNLTNDGI KIRCAHMGNY TLLKVAGSAC RKAEFDELNV NSFRIQGPSH SFLGRCFIEV 720 ENGFRVDSFP LIIANATICK ELNHLEGKFH HRDITEQAHS SPTSREEVLR FLNELGWLFQ 780 KKKHMSSDFQ GDSDFALTRF KFLLVFSVER DYCTLVRTIL DMVVDRNSDR DGLNTESWDI 840 LSEIQLLNRA VKRRSPKMAE MLIHYSVNPS PDSSKSFIFP PNVSGPGGIT PLHLAACSSG 900 SEDMIDVLTN DPQEIGLTSW NTLRDSSGQT PYSYAAVRNN HGYNTLVARK LADKRNLQVS 960 MNIGIEGIEQ MMGRSKSKRS CETCGTVALK YGRRVSGSNR LFPTPLIHSM LAVAAVCVCV 1020 CVFMHAFPTV RQGGHFSWGG LDYGPM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-31 | 133 | 216 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 848 | 853 | RAVKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269|PubMed:15703061}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010534402.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010534402.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 14 isoform X1 | ||||
Swissprot | Q8RY95 | 0.0 | SPL14_ARATH; Squamosa promoter-binding-like protein 14 | ||||
TrEMBL | A0A1J3JYZ9 | 0.0 | A0A1J3JYZ9_NOCCA; Squamosa promoter-binding-like protein 14 | ||||
STRING | XP_010534402.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3999 | 25 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20980.1 | 0.0 | squamosa promoter binding protein-like 14 |
Publications ? help Back to Top | |||
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