PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010534167.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

C2H2

Protein Properties

Length: 437aa MW: 48682.5 Da PI: 8.4407

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010534167.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18	7.8e-06	74	96	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H XP_010534167.1 74 YVCEICSQGFQRDQNLQMHRRRH 96 9*********************9 PP
2	zf-C2H2	14.5	0.0001	152	174	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k + +s++k H++t+ XP_010534167.1 152 WVCERCSKGYAVQSDYKAHLKTC 174 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	7.54E-5	71	97	No hit	No description
Gene3D	G3DSA:3.30.160.60	6.1E-5	73	96	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.907	74	96	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.011	74	96	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	76	96	IPR007087	Zinc finger, C2H2
SMART	SM00355	160	116	146	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	0.001	143	173	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	100	152	179	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence Send to blast
MIDYDTINSN SSSRSNPHNN HRNGPSSSSD HLLDNNGSAS SASQKRKRRP AGTPDPDAEV 60 MSLSPRTLLE SDRYVCEICS QGFQRDQNLQ MHRRRHKVPW KLLKRENNQE LRKRVYVCPE 120 PTCLHHDPCH ALGDLVGIKK HFRRKHSSHK QWVCERCSKG YAVQSDYKAH LKTCGTRGHS 180 CDCGRVFSRV ERFIEHQDNC TMRRAQPLAA AAMAATSSRT ASTASTPSSD TANLCVGPLL 240 PGLPLLGPPP TSDQQRSTLL YPLDPRPRND NPELHLLPSR NADETHETSL ELSIGVTTQM 300 ARTSFDMQRK NGYEKGETSS RAEVSLMERG SEQLMIAEEA RREAKRQIEM AEMEFANAKR 360 IRQQAQAELE KAQILRDEAT KRISATMMQI TCHSCKQQFQ APVAATSAVA PPSFAADEST 420 SLAVSYVSSG TTEGEGE

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence Send to blast

MIDYDTINSN SSSRSNPHNN HRNGPSSSSD HLLDNNGSAS SASQKRKRRP AGTPDPDAEV  60
MSLSPRTLLE SDRYVCEICS QGFQRDQNLQ MHRRRHKVPW KLLKRENNQE LRKRVYVCPE  120
PTCLHHDPCH ALGDLVGIKK HFRRKHSSHK QWVCERCSKG YAVQSDYKAH LKTCGTRGHS  180
CDCGRVFSRV ERFIEHQDNC TMRRAQPLAA AAMAATSSRT ASTASTPSSD TANLCVGPLL  240
PGLPLLGPPP TSDQQRSTLL YPLDPRPRND NPELHLLPSR NADETHETSL ELSIGVTTQM  300
ARTSFDMQRK NGYEKGETSS RAEVSLMERG SEQLMIAEEA RREAKRQIEM AEMEFANAKR  360
IRQQAQAELE KAQILRDEAT KRISATMMQI TCHSCKQQFQ APVAATSAVA PPSFAADEST  420
SLAVSYVSSG TTEGEGE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	4e-17	150	200	5	55	Zinc finger protein JACKDAW
5b3h_F	4e-17	150	200	5	55	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269\|PubMed:21556057, ECO:0000269\|PubMed:24039602}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010534167.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by auxin. {ECO:0000269\|PubMed:24039602}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010534167.1	0.0	PREDICTED: protein indeterminate-domain 14-like
Swissprot	Q9C9X7	0.0	IDD14_ARATH; Protein indeterminate-domain 14
TrEMBL	D7KVR7	0.0	D7KVR7_ARALL; Atidd14-domain 14
STRING	XP_010534167.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM693	28	131

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	1e-159	indeterminate(ID)-domain 14

Publications ? help Back to Top
Arendsee ZW,Li L,Wurtele ES Coming of age: orphan genes in plants. Trends Plant Sci., 2014. 19(11): p. 698-708 [PMID:25151064] Qu Y, et al. Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis. J. Exp. Bot., 2017. 68(17): p. 4851-4867 [PMID:28992128]