PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010532069.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family AP2
Protein Properties Length: 331aa    MW: 37121.1 Da    PI: 9.1899
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010532069.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.54.3e-1547106155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  ++n    +r ++++lg ++ +  Aa+a++ a++k++g
  XP_010532069.1  47 SVYRGVTRHRWTGRYEAHLWDkNCWNEtqnRRgRQVYLGAYDDEAAAARAYDLAALKYWG 106
                     78*******************999966655447**********99*************98 PP
2AP252.41.3e-16149200155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  XP_010532069.1 149 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAIAYDIAAIEYRG 200
                     89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.68E-1647115IPR016177DNA-binding domain
PfamPF008479.8E-1247106IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-1548115IPR001471AP2/ERF domain
SMARTSM003801.7E-2348120IPR001471AP2/ERF domain
PROSITE profilePS5103220.28448114IPR001471AP2/ERF domain
PRINTSPR003674.2E-64960IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-17149210IPR016177DNA-binding domain
CDDcd000181.35E-13149210No hitNo description
PfamPF008471.2E-11149200IPR001471AP2/ERF domain
PROSITE profilePS5103218.241150208IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-17150209IPR001471AP2/ERF domain
SMARTSM003801.2E-25150214IPR001471AP2/ERF domain
PRINTSPR003674.2E-6190210IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MGKVSRRSKK TVDESGGAMA SASASTGQKA KRTRRSLPRD APPQRSSVYR GVTRHRWTGR  60
YEAHLWDKNC WNETQNRRGR QVYLGAYDDE AAAARAYDLA ALKYWGRDTI LNFPVASYED  120
DLKEMEGQSK EEYIGSLRRK SSGFSRGVSK YRGVARHHHN GRWEARIGRV FGNKYLYLGT  180
YATQEEAAIA YDIAAIEYRG LNAVTNFDLS RYLKFLSPGN LTDGKLHLPA NPNSDTNPSS  240
DPSHHHESES SQEQTSSYSP SVARFLLSPS KVKEIIEPLT PAEIARPGRS FPGDIQTYFG  300
GQDPGKLMTE EDVIFGELDS FISPEFYSEL G
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010532069.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010532069.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-145AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A1J3HBM01e-160A0A1J3HBM0_NOCCA; AP2-like ethylene-responsive transcription factor
TrEMBLA0A1J3IKB91e-160A0A1J3IKB9_NOCCA; AP2-like ethylene-responsive transcription factor
STRINGXP_010532069.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55327140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-126ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]