PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010528591.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GRF
Protein Properties Length: 323aa    MW: 35901.8 Da    PI: 8.4784
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010528591.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.41.4e-2477121145
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                     d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+
  XP_010528591.1  77 DPEPGRCRRTDGKKWRCSKEAHPDSKYCERHMHRGRNRSRKPVES 121
                     79****************************************997 PP
2QLQ58.61.8e-201551137
             QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                    s FT +Q+q+L++Q+l++Ky++a++PvPp+L+++iqk
  XP_010528591.1 15 SLFTVSQWQELEHQALIFKYIIAGLPVPPDLVLPIQK 51
                    68*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009517.0E-111551IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.8451651IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.5E-151750IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.83177121IPR014977WRC domain
PfamPF088794.4E-2178120IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MAFSHWRGGV MRSSSLFTVS QWQELEHQAL IFKYIIAGLP VPPDLVLPIQ KSFENISHRF  60
FTHPSFSSCS LYGKKIDPEP GRCRRTDGKK WRCSKEAHPD SKYCERHMHR GRNRSRKPVE  120
SSLQPTNTTT SMHSSSSSST ATSLFTVVPG GGHSGNYQNI PLHRFGNIQP ATASVNCDQS  180
TYNVDSIPFG IPSKDYGYMQ MQGLKPESVE HSFFSAASGS NKNVQTSLLE NGNTWPVMQG  240
SLQNSYDQSS SFFNIDFASG EATKHDGQSL RPFLDEWPKA RASWSGLEDD RSNQYTTTTQ  300
LSISIPMVSS GFSSANSHSP HDT
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010528591.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3824885e-42FQ382488.1 Vitis vinifera clone SS0ABG55YD19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010528591.10.0PREDICTED: growth-regulating factor 3-like isoform X1
TrEMBLA0A067EAQ21e-135A0A067EAQ2_CITSI; Uncharacterized protein
STRINGXP_010528591.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM143391019
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.12e-42growth-regulating factor 5