PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010528425.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 229aa MW: 25980.6 Da PI: 10.0612 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 73.8 | 1.4e-23 | 10 | 56 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +ienk++rqvtfsk g+ KKA+E+SvLCdaeva+++fss+gkl+eys XP_010528425.1 10 QIENKIRRQVTFSK--XGLVKKAQEISVLCDAEVALVVFSSKGKLFEYS 56 69***********7..8*******************************8 PP | |||||||
2 | K-box | 83.6 | 4.2e-28 | 86 | 172 | 14 | 100 |
K-box 14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + ++++e +kL + i+ qr++Rhl+Ge+++ Ls++eLq+Le qL+ slkk Rs+Kn+l+le+i +lqkkekel+e ++L+kk++e XP_010528425.1 86 QGNSSTECSKLLRMIDVVQRSLRHLKGEEMDGLSIRELQSLEMQLDISLKKTRSRKNQLMLESITQLQKKEKELKELRNQLTKKIDE 172 66899*******************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 25.119 | 1 | 59 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.5E-28 | 1 | 58 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 9.03E-26 | 2 | 75 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 8.89E-32 | 2 | 76 | No hit | No description |
Pfam | PF00319 | 6.9E-19 | 11 | 55 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-13 | 21 | 36 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-13 | 36 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.9E-23 | 85 | 170 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.613 | 86 | 176 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MGRGRVQLRQ IENKIRRQVT FSKXGLVKKA QEISVLCDAE VALVVFSSKG KLFEYSAGSS 60 MDKIIDRYER HSCSSQEIPA PISDSQGNSS TECSKLLRMI DVVQRSLRHL KGEEMDGLSI 120 RELQSLEMQL DISLKKTRSR KNQLMLESIT QLQKKEKELK ELRNQLTKKI DESKKVERVD 180 QSGELEPSSP PPPLSLGGAF QRREADAGTL IRPPTSTTLP HWMPRRSED |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 5e-18 | 1 | 72 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 5e-18 | 1 | 72 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 5e-18 | 1 | 72 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 5e-18 | 1 | 72 | 1 | 73 | MEF2 CHIMERA |
6bz1_A | 5e-18 | 1 | 72 | 1 | 73 | MEF2 CHIMERA |
6bz1_B | 5e-18 | 1 | 72 | 1 | 73 | MEF2 CHIMERA |
6bz1_C | 5e-18 | 1 | 72 | 1 | 73 | MEF2 CHIMERA |
6bz1_D | 5e-18 | 1 | 72 | 1 | 73 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010528425.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010528425.1 | 1e-165 | PREDICTED: LOW QUALITY PROTEIN: truncated transcription factor CAULIFLOWER A | ||||
Swissprot | Q6E6S7 | 7e-72 | AP1_VITVI; Agamous-like MADS-box protein AP1 | ||||
TrEMBL | V4KMQ1 | 1e-102 | V4KMQ1_EUTSA; Uncharacterized protein | ||||
STRING | XP_010528425.1 | 1e-164 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13033 | 15 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G30260.1 | 1e-86 | AGAMOUS-like 79 |
Publications ? help Back to Top | |||
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