PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010527914.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family M-type_MADS
Protein Properties Length: 380aa    MW: 42789.5 Da    PI: 8.0349
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010527914.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.82.1e-211053245
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    + en+  rq tf+kR++gi+KKA+ELS+LCd+ va+++fs++gk
  XP_010527914.1 10 KLENTNGRQATFAKRKHGIMKKANELSILCDIHVALLMFSPSGK 53
                    6799**************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.5E-30160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.207153IPR002100Transcription factor, MADS-box
CDDcd001202.79E-25254No hitNo description
SuperFamilySSF554551.44E-25295IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-17323IPR002100Transcription factor, MADS-box
PfamPF003198.9E-201154IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-172338IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-173859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MGRVKLKIKK LENTNGRQAT FAKRKHGIMK KANELSILCD IHVALLMFSP SGKPSLCCGR  60
HSTIEEVIAK FAQVTPQERT KRKLESLEAL KKTFKKLDHD VNIREFIASG NPTVEDLSHQ  120
ARALQARLSE THRRISYWSE PEKINSIEHL GQLEISIRQS LDQLRAHKVS IPLLHVIISH  180
RVPEXRRFTL LFCCQQNLLQ MENSGLVKDW SNCLIQDGIQ IPLDQQLQSL SWIANNSSSN  240
IVTEELNLIP QRDIECSASS SFGSYSGYFG TGKSPEISIS GQETSFIDEL TGTAQLRPLA  300
NTQQFAYIPY NPNLPNDVKH QPLPPGLNLP MNQQTTDYHM NDLFESPGSS QARFGSSSSS  360
MPCSVAMFDD FFFSQLMQPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-13192190MEF2 CHIMERA
6byy_B3e-13192190MEF2 CHIMERA
6byy_C3e-13192190MEF2 CHIMERA
6byy_D3e-13192190MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010527914.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019057132.10.0PREDICTED: agamous-like MADS-box protein AGL30
SwissprotQ1PFA41e-167AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBLD7LQC81e-172D7LQC8_ARALL; Predicted protein
STRINGXP_010527914.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87542539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.21e-145AGAMOUS-like 30
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]