PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010527541.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family G2-like
Protein Properties Length: 326aa    MW: 36385.4 Da    PI: 8.0127
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010527541.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.52.6e-32224279156
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     k+r++W+peLH+rF++a+++LGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  XP_010527541.1 224 KQRRCWSPELHRRFLNALQHLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 279
                     79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-28221282IPR009057Homeodomain-like
PROSITE profilePS5129414.256221281IPR017930Myb domain
SuperFamilySSF466896.81E-18222282IPR009057Homeodomain-like
TIGRFAMsTIGR015573.1E-28224279IPR006447Myb domain, plants
PfamPF002492.8E-7226277IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MLKNVDMDYA QKMQRCHEYV EALEEERKKI QVFQRELPLC LELVTQAIEA CRREIISGTP  60
SDYVQGQSDC SEQTTSDCGG PVFEEFIPIK RSSSCDEDGE HESRESENDG DEKISTNSGN  120
NTDKKKSDWL RSVQLWNQSP DPQPKEDQAA KMKTVVEVKR NGGAFQPFQK EKLVPKSNQQ  180
PVKATTSAPA PASSQAVTGG GKSELEEAQP QQKQTQTQTQ AQRKQRRCWS PELHRRFLNA  240
LQHLGGSHVA TPKQIRELMK VDGLTNDEVK SHLQKYRLHT RRPATPAQPQ RTPPSPMRSG  300
DGNSGRCNSP ATSSSTHTTT TSSPVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A7e-13224277255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B7e-13224277255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A6e-13224277154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-13224277154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-13224277154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-13224277154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A7e-13224277255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C7e-13224277255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D7e-13224277255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F7e-13224277255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H7e-13224277255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J7e-13224277255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010527541.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010527541.10.0PREDICTED: myb family transcription factor EFM-like
SwissprotQ9FPE81e-122HHO3_ARATH; Transcription factor HHO3
TrEMBLA0A178W8X01e-120A0A178W8X0_ARATH; Uncharacterized protein
STRINGXP_010527541.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34912863
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25550.11e-107G2-like family protein
Publications ? help Back to Top
  1. Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
    Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
    Plant Cell Physiol., 2016. 57(6): p. 1142-52
    [PMID:27016098]